AT4G08210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.939 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G09040.1); Has 52225 Blast hits to 13811 proteins in 210 species: Archae - 0; Bacteria - 6; Metazoa - 106; Fungi - 36; Plants - 51478; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:5183813..5185873 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75829.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 686 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVMDLKLIAA GLRHCGKVQA FKRGESIQAH VIKQGISQNV FIANNVISMY VDFRLLSDAH KVFDEMSERN IVTWTTMVSG YTSDGKPNKA IELYRRMLDS 101: EEEAANEFMY SAVLKACGLV GDIQLGILVY ERIGKENLRG DVVLMNSVVD MYVKNGRLIE ANSSFKEILR PSSTSWNTLI SGYCKAGLMD EAVTLFHRMP 201: QPNVVSWNCL ISGFVDKGSP RALEFLVRMQ REGLVLDGFA LPCGLKACSF GGLLTMGKQL HCCVVKSGLE SSPFAISALI DMYSNCGSLI YAADVFHQEK 301: LAVNSSVAVW NSMLSGFLIN EENEAALWLL LQIYQSDLCF DSYTLSGALK ICINYVNLRL GLQVHSLVVV SGYELDYIVG SILVDLHANV GNIQDAHKLF 401: HRLPNKDIIA FSGLIRGCVK SGFNSLAFYL FRELIKLGLD ADQFIVSNIL KVCSSLASLG WGKQIHGLCI KKGYESEPVT ATALVDMYVK CGEIDNGVVL 501: FDGMLERDVV SWTGIIVGFG QNGRVEEAFR YFHKMINIGI EPNKVTFLGL LSACRHSGLL EEARSTLETM KSEYGLEPYL EHYYCVVDLL GQAGLFQEAN 601: ELINKMPLEP DKTIWTSLLT ACGTHKNAGL VTVIAEKLLK GFPDDPSVYT SLSNAYATLG MWDQLSKVRE AAKKLGAKES GMSWII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)