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AT4G08150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : KNOTTED-like from Arabidopsis thaliana
Curator
Summary (TAIR10)
A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.
Computational
Description (TAIR10)
KNOTTED-like from Arabidopsis thaliana (KNAT1); CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOX/ELK homeobox transcription factor (TAIR:AT1G62360.1); Has 31270 Blast hits to 14770 proteins in 476 species: Archae - 4; Bacteria - 107; Metazoa - 2529; Fungi - 972; Plants - 3913; Viruses - 2; Other Eukaryotes - 23743 (source: NCBI BLink).
Protein Annotations
BioGrid:11664eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AC006267EMBL:AF482994EMBL:AF482995EMBL:AL161510
EMBL:AY080834EMBL:AY113982EMBL:CP002687EMBL:U14174EnsemblPlants:AT4G08150EnsemblPlants:AT4G08150.1entrez:826364
Gene3D:1.10.10.60GeneID:826364Genevisible:P46639GO:GO:0001708GO:GO:0003700GO:GO:0005634GO:GO:0010051
GO:GO:0010089GO:GO:0043565GO:GO:0045165Gramene:AT4G08150.1hmmpanther:PTHR11850hmmpanther:PTHR11850:SF64HOGENOM:HOG000272741
InParanoid:P46639IntAct:P46639InterPro:IPR001356InterPro:IPR005539InterPro:IPR005540InterPro:IPR005541InterPro:IPR008422
InterPro:IPR009057InterPro:IPR017970KEGG:ath:AT4G08150OMA:RENDPPEPaxDb:P46639Pfam:P46639Pfam:PF03789
Pfam:PF03790Pfam:PF03791Pfam:PF05920Pfscan:PS50071Pfscan:PS51213PhylomeDB:P46639PIR:D85080
PRIDE:P46639PRO:PR:P46639PROSITE:PS00027PROSITE:PS50071PROSITE:PS51213ProteinModelPortal:P46639Proteomes:UP000006548
RefSeq:NP_192555.1scanprosite:PS00027SMART:SM00389SMART:SM01188SMART:SM01255SMART:SM01256SMR:P46639
STRING:3702.AT4G08150.1SUPFAM:SSF46689TAIR:AT4G08150tair10-symbols:BPtair10-symbols:BP1tair10-symbols:KNAT1UniGene:At.28060
UniGene:At.72028UniProt:P46639
Coordinates (TAIR10) chr4:-:5147969..5150610
Molecular Weight (calculated) 45838.00 Da
IEP (calculated) 6.47
GRAVY (calculated) -1.11
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)