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AT4G07820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: pathogenesis-related gene 1 (TAIR:AT2G14610.1); Has 1260 Blast hits to 1257 proteins in 183 species: Archae - 0; Bacteria - 38; Metazoa - 213; Fungi - 167; Plants - 826; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2340eggNOG:KOG3017EMBL:AF128395EMBL:AL161507
EMBL:BT011574EMBL:BT012240EMBL:CP002687EnsemblPlants:AT4G07820
EnsemblPlants:AT4G07820.1entrez:826263Gene3D:3.40.33.10GeneID:826263
Gramene:AT4G07820.1hmmpanther:PTHR10334hmmpanther:PTHR10334:SF231HOGENOM:HOG000036879
InterPro:IPR001283InterPro:IPR014044KEGG:ath:AT4G07820PANTHER:PTHR10334
Pfam:PF00188PhylomeDB:Q9ZPG2PIR:D85077PRINTS:PR00837
Proteomes:UP000006548RefSeq:NP_192524.1SMART:SM00198SMR:Q9ZPG2
STRING:3702.AT4G07820.1SUPFAM:SSF55797TAIR:AT4G07820UniGene:At.49679
UniProt:Q9ZPG2
Coordinates (TAIR10) chr4:-:4636864..4637346
Molecular Weight (calculated) 17747.10 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.08
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNSYPNLLV LAIALALSFS VPLKAQDQPQ DYFNAHNRAR VSVGVSPLMW SQTLTAYAQA YAEKRRDCGL FLSGGPYGET IKADIIDFSA EEFVSTFLNQ
101: KSDYDYTTNT CRAGKSCDGY KQVLFRKSVF LGCAKVKCNN GGFLAICSYD PSVILSERPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)