AT4G07410.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G27470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:4201465..4205136 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90274.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 815 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLEYRCSSVD WKPSPVVALA NSSDDSQVAA AREDGSLEIW LVSPGAVGWH CQLTIHGDPN SRISSLAWCC SPSIGLPSGR LFSSSIDGSI SEWDLFDLKQ 101: KIVLESIGIS IWQMALAPIS GFSSDVEGIK NGYLSEKSND EEEIGSEEDG SDSDEFHEKS EEEIDRILAA ACDDGCVRLY RISNLEKLTY YRSLPRVSGR 201: ALSVTWSPDA KRIFSGSSDG LIRCWDATSC HEVYRITAGL GGLGSSSEIC VWSLLSLRCS VLVSGDSTGT VQFWDSEHGT LLEAHSNHKG DVNTLAAAPS 301: HNRVFSAGAD GQVILYKLSG STNGSQDLKP SSSQKWDYIG YVKAHTHDIR ALTVAVPISR EDPFPDDILP DKASRKHRKK GKPVDFTYHK WAHLGVPMLI 401: SAGDDAKLFA YSIQEFTKFS PHDICPAPQR IPMQMVHNSM FNKTSLLLVQ GISTLDILRL NISSDSSGRA STKSLVRVKS RDARKIICSA ISNTGSHFAY 501: SDQIGPSLFE LKKNEFTKCP WSVSRRRLPE LPFAHSMIFS SDCSRLIIAG HDRRIYTIDI SSLELVYAFT PSREEHEGEA PTPKEPPITK LFTSSDGQWL 601: AAINCFGDIY VFNLETQRQH WFISRLDGAS VTAAGFHPWN NNALVISTSS NQVFAFDVEA RQLGKWSLLN TYVLPKRYQE FPGEVLGLSF SPSPNSSSVI 701: VYSSRAKCLI DFGKPVEEDE EYDLPNGNLS KTLEGKLVNL GLKKGKGTNR KRRLDEYQLE GKSNERKNFE ILPSNHPVLF VGHLSKNSIL VIEKPWMDVV 801: KSLDNQPVDR HIFGT |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)