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AT4G07390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.671
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mannose-P-dolichol utilization defect 1 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mannose-P-dolichol utilization defect 1 protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603), Mannose-P-dolichol utilization defect 1 protein (InterPro:IPR016817); BEST Arabidopsis thaliana protein match is: Mannose-P-dolichol utilization defect 1 protein (TAIR:AT5G59470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111FE3eggNOG:KOG3211EMBL:AF147262EMBL:AL161505EMBL:AY072415EMBL:AY086246EMBL:AY114712
EMBL:CP002687EnsemblPlants:AT4G07390EnsemblPlants:AT4G07390.1entrez:826170GeneID:826170Genevisible:Q8VY63GO:GO:0006810
GO:GO:0016021Gramene:AT4G07390.1hmmpanther:PTHR12226hmmpanther:PTHR12226:SF2HOGENOM:HOG000189346InParanoid:Q8VY63InterPro:IPR006603
InterPro:IPR016817KEGG:ath:AT4G07390KO:K09660OMA:IQVLGGKPANTHER:PTHR12226PaxDb:Q8VY63Pfam:PF04193
Pfam:Q8VY63PhylomeDB:Q8VY63PIR:A85072PIRSF:PIRSF023381PRIDE:Q8VY63PRO:PR:Q8VY63ProteinModelPortal:Q8VY63
Proteomes:UP000006548Reactome:R-ATH-446193RefSeq:NP_567315.1SMART:SM00679STRING:3702.AT4G07390.1TAIR:AT4G07390TMHMM:TMhelix
UniGene:At.25518UniProt:Q8VY63
Coordinates (TAIR10) chr4:+:4195750..4197317
Molecular Weight (calculated) 25800.20 Da
IEP (calculated) 9.15
GRAVY (calculated) 0.61
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYLGIDMSC AIGSLRNGDF PEKDCLLPLI SKLLGYCLVA ASITVKLPQI MKIVQHKSVR GLSVVAFELE VVGYTISLAY CLHKGLPFSA FGEMAFLLIQ
101: ALILVACIYY YSQPVPVTTW IRPLLYCAVA PTVLAGQINP TLFEALYASQ HAIFLFARLP QIWKNFKNKS TGELSFLTFF MNFAGSIVRV FTSLQEKAPI
201: SILTGFALGV VTNGSILTQI LLYSKPAAAK EKKAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)