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AT4G05630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.973
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12617.1); Has 22 Blast hits to 22 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB493677EMBL:AF147261EMBL:AJ441293EMBL:AL161504EMBL:CP002687EnsemblPlants:AT4G05630EnsemblPlants:AT4G05630.1
entrez:825935Gene3D:2.40.330.10GeneID:825935Genevisible:Q9M0U1GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT4G05630.1hmmpanther:PTHR34269HOGENOM:HOG000064551InParanoid:Q9M0U1InterPro:IPR015300KEGG:ath:AT4G05630
OMA:MEISTLVPaxDb:Q9M0U1Pfam:Q9M0U1PIR:G85070PRO:PR:Q9M0U1ProteinModelPortal:Q9M0U1Proteomes:UP000006548
RefSeq:NP_192472.1SMR:Q9M0U1STRING:3702.AT4G05630.1SUPFAM:SSF101936TAIR:AT4G05630UniGene:At.33838UniProt:Q9M0U1
Coordinates (TAIR10) chr4:-:2988448..2988822
Molecular Weight (calculated) 14657.70 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.35
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MANFPDKQYD SNNPYNIMIT LSPFDVDRST TIMMPKALLE TNLFPFMEIS TLVQLLQVQD KPKMIGVYDI DTQITTYVII RQDGNNFKFH GWNDILKRKH
101: YKAGDTIAFW WDLRHTRLNF KHVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)