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AT4G05620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.870
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39600.1); Has 552 Blast hits to 542 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 552; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL161504EMBL:CP002687EnsemblPlants:AT4G05620EnsemblPlants:AT4G05620.1entrez:825934
GeneID:825934Genevisible:Q9M0U2Gramene:AT4G05620.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23KEGG:ath:AT4G05620PaxDb:Q9M0U2
Pfam:Q9M0U2PhylomeDB:Q9M0U2PIR:F85070PRO:PR:Q9M0U2ProteinModelPortal:Q9M0U2Proteomes:UP000006548RefSeq:NP_192471.1
SMR:Q9M0U2STRING:3702.AT4G05620.1TAIR:AT4G05620UniGene:At.65330UniProt:Q9M0U2
Coordinates (TAIR10) chr4:-:2985051..2985449
Molecular Weight (calculated) 14890.40 Da
IEP (calculated) 10.31
GRAVY (calculated) 0.05
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPVTTNGK EPLVRKQKKS LSLPHDVLVS CLAHVSRLHY SILSLVLKNF RSLIASPELY KTRSLLGRIE SCLYVCLRFP NESHPRWFTL YMKPNQIVAN
101: NKSNCNLLVP TPTISSSPAH WLCLIAVGSR IY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)