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AT4G05400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : copper ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
copper ion binding; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 54 Blast hits to 54 proteins in 22 species: Archae - 8; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWYSeggNOG:ENOG410Y75AEMBL:AK175570EMBL:AL161503EMBL:BT010418EMBL:CP002687EnsemblPlants:AT4G05400
EnsemblPlants:AT4G05400.1EnsemblPlants:AT4G05400.2entrez:825888GeneID:825888GO:GO:0005507GO:GO:0005739Gramene:AT4G05400.1
Gramene:AT4G05400.2hmmpanther:PTHR13359hmmpanther:PTHR13359:SF2HOGENOM:HOG000237908IntAct:Q9M0V5KEGG:ath:AT4G05400OMA:YEQCLNA
PhylomeDB:Q9M0V5PIR:H85067Proteomes:UP000006548RefSeq:NP_001031586.1RefSeq:NP_192449.1SMR:Q9M0V5STRING:3702.AT4G05400.1
TAIR:AT4G05400UniGene:At.27619UniGene:At.33853UniProt:Q9M0V5
Coordinates (TAIR10) chr4:+:2741256..2742008
Molecular Weight (calculated) 27628.70 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.72
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRVTKPKAI IESLSYHLIQ RCSASGTPKG KAKLKTGQPL KRNKLSIKKG GGGGGAPVEG EEAVKGKGRI SDEKQKLYEQ CLNAPCPVRY LTPQEIEREA
101: QREKLGLISK EKQRDMEIQK KGGAASMGVT DEPMRIGTPG LDYISLGIFE AEELPKYKLT EEDGERLAKE YSKVLMREHR ERRAAETALL NLKKSAIEAL
201: PENLKKAALE PDLTPFPANR GMATLTPPIE GYLEKVMDAA KKSSSKEKLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)