suba logo
AT4G05390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root FNR 1
Curator
Summary (TAIR10)
Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
Computational
Description (TAIR10)
root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G05390-MONOMERBioCyc:ARA:GQT-840-MONOMEREC:1.18.1.2eggNOG:COG0369
eggNOG:KOG1158EMBL:AL161503EMBL:AY072339EMBL:AY087271
EMBL:AY114609EMBL:AY136312EMBL:CP002687EnsemblPlants:AT4G05390
EnsemblPlants:AT4G05390.1entrez:825887ExpressionAtlas:Q9M0V6GeneID:825887
Genevisible:Q9M0V6GO:GO:0004324GO:GO:0005507GO:GO:0009507
GO:GO:0015979hmmpanther:PTHR19384hmmpanther:PTHR19384:SF54HOGENOM:HOG000220125
InParanoid:Q9M0V6InterPro:IPR001433InterPro:IPR001709InterPro:IPR015701
InterPro:IPR017927InterPro:IPR017938ncoils:CoilOMA:NTVNFCN
PaxDb:Q9M0V6Pfam:PF00175Pfam:Q9M0V6Pfscan:PS51384
PhylomeDB:Q9M0V6PIR:G85067PIRSF:PIRSF000361PRIDE:Q9M0V6
PRINTS:PR00371PRO:PR:Q9M0V6PROSITE:PS51384ProteinModelPortal:Q9M0V6
Proteomes:UP000006548RefSeq:NP_567293.1SMR:Q9M0V6STRING:3702.AT4G05390.1
SUPFAM:SSF52343SUPFAM:SSF63380TAIR:AT4G05390tair10-symbols:ATRFNR1
tair10-symbols:RFNR1UniGene:At.33854UniProt:Q9M0V6
Coordinates (TAIR10) chr4:-:2738839..2740483
Molecular Weight (calculated) 42398.70 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.56
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSTTPSQM SVALPTRIDG SSRSMIKVQS ISFTDKSWGP PLLRLDSKSR SLGVKKRSTI CMSLQQSSKS KVLVTPLELE DPKETPLNLF RPKEPYTATI
101: VSVERIVGPQ APGETCHIVI DHDGNVPYWE GQSYGVIPPG ENPKKPGAPH NVRLYSIAST RYGDSFDGKT ASLCVRRAIY YDPETGKEDP SKAGVCSNFL
201: CNAKPGDKVK ITGPSGKVML LPEDDPKATH IMIATGTGVA PYRGYLRRMF MENVPNFKFD GLAWLFLGVA NSDSLLYDEE FAGYRKDYPE NFRYDKALSR
301: EEKNKKGGKM YVQDKIEEYS DEIFKLLDNG AHIYFCGLKG MMPGIQDTLK RVAEERGESW EQKLTQLRKN KQWHVEVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)