suba logo
AT4G05320.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.599
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : polyubiquitin 10
Curator
Summary (TAIR10)
One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
Computational
Description (TAIR10)
polyubiquitin 10 (UBQ10); INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5272eggNOG:KOG0001EMBL:AY052698EMBL:CP002687EnsemblPlants:AT4G05320EnsemblPlants:AT4G05320.1EnsemblPlants:AT4G05320.3
EnsemblPlants:AT4G05320.6entrez:825847entrez:825880entrez:828148ExpressionAtlas:Q3EAA5GeneID:825880GO:GO:0005737
Gramene:AT4G05320.1Gramene:AT4G05320.3Gramene:AT4G05320.6hmmpanther:PTHR10666hmmpanther:PTHR10666:SF155HOGENOM:HOG000233942InterPro:IPR000626
InterPro:IPR019954InterPro:IPR019956InterPro:IPR029071KEGG:ath:AT4G05320KO:K08770Pfam:PF00240Pfscan:PS50053
PRINTS:PR00348PROSITE:PS00299PROSITE:PS50053Proteomes:UP000006548RefSeq:NP_001078353.4RefSeq:NP_567291.4RefSeq:NP_849300.4
scanprosite:PS00299SMART:SM00213SMR:Q3EAA5STRING:3702.AT5G20620.1SUPFAM:SSF54236TAIR:AT4G05320tair10-symbols:UBQ10
UniGene:At.23108UniGene:At.24970UniGene:At.25274UniGene:At.47590UniProt:Q3EAA5
Coordinates (TAIR10) chr4:+:2718559..2719932
Molecular Weight (calculated) 42701.60 Da
IEP (calculated) 7.85
GRAVY (calculated) -0.44
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)