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AT4G05180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20843791 (2010): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem II subunit Q-2
Curator
Summary (TAIR10)
Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.
Computational
Description (TAIR10)
photosystem II subunit Q-2 (PSBQ-2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 206 Blast hits to 206 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:11177eggNOG:ENOG410INGCeggNOG:ENOG4111SJAEMBL:AF372897
EMBL:AL161503EMBL:AY088008EMBL:BT000648EMBL:CP002687
EMBL:Z17777EnsemblPlants:AT4G05180EnsemblPlants:AT4G05180.1entrez:825866
Gene3D:1.20.120.290GeneID:825866Genevisible:Q41932GO:GO:0005509
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009570
GO:GO:0009579GO:GO:0009654GO:GO:0015979GO:GO:0019898
GO:GO:0031977GO:GO:0048046Gramene:AT4G05180.1gramene_pathway:1.10.3.2
gramene_pathway:PWY-101hmmpanther:PTHR33399hmmpanther:PTHR33399:SF3HOGENOM:HOG000029167
InParanoid:Q41932IntAct:Q41932InterPro:IPR008797InterPro:IPR023222
iPTMnet:Q41932KEGG:ath:AT4G05180KO:K08901MINT:MINT-8360607
OMA:DRFYIQPPaxDb:Q41932Pfam:PF05757Pfam:Q41932
PhylomeDB:Q41932PIR:B85065PRIDE:Q41932PRO:PR:Q41932
ProteinModelPortal:Q41932Proteomes:UP000006548RefSeq:NP_192427.1SMR:Q41932
STRING:3702.AT4G05180.1SUPFAM:0048472SUPFAM:SSF101112TAIR:AT4G05180
tair10-symbols:PSBQtair10-symbols:PSBQ-2tair10-symbols:PSII-QUniGene:At.21853
UniProt:Q41932
Coordinates (TAIR10) chr4:-:2672093..2673170
Molecular Weight (calculated) 24644.40 Da
IEP (calculated) 10.28
GRAVY (calculated) -0.24
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)