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AT4G05170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G21340.1); Has 1452 Blast hits to 1452 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 4; Plants - 1443; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
DNASU:825865EMBL:AL161503EMBL:BT015446EMBL:CP002687
EnsemblPlants:AT4G05170EnsemblPlants:AT4G05170.1entrez:825865Gene3D:4.10.280.10
GeneID:825865Genevisible:Q9M0X8GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT4G05170.1hmmpanther:PTHR16223
hmmpanther:PTHR16223:SF21HOGENOM:HOG000095220InParanoid:Q9M0X8InterPro:IPR011598
KEGG:ath:AT4G05170ncoils:CoilPaxDb:Q9M0X8Pfam:PF00010
Pfam:Q9M0X8Pfscan:PS50888PhylomeDB:Q9M0X8PIR:A85065
PRO:PR:Q9M0X8PROSITE:PS50888ProteinModelPortal:Q9M0X8Proteomes:UP000006548
RefSeq:NP_192426.2SMART:SM00353SMR:Q9M0X8STRING:3702.AT4G05170.1
SUPFAM:SSF47459TAIR:AT4G05170UniGene:At.51015UniProt:Q9M0X8
Coordinates (TAIR10) chr4:-:2667990..2669187
Molecular Weight (calculated) 26802.60 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.53
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MNMHNSFFEG LLIDPNDQLL PDPWSKSTIP NAKSELLENF PFLDNMFLVD SEAESLLDHE IRNHKSSKEQ ITQDYKNLTS KRSEELEENS DEYSPRLLKR
101: PRLETLSPLP SFKVRKEKLG DRITALQQLV SPFGKTDTAS VLNEAVEYIK FLQEQVTVLS NPEQNTIGSV QQQQCSNKKS INTQGEVEED ECSPRRYVDL
201: SSRGLCLMPI SASYPVAAAA ASAAEMNVHL VSGIFHSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)