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AT4G05050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.865
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin 11
Curator
Summary (TAIR10)
polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.
Computational
Description (TAIR10)
ubiquitin 11 (UBQ11); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5272eggNOG:KOG0001EMBL:AK226406EMBL:BT001165EMBL:JX089333EnsemblPlants:AT4G02890.1EnsemblPlants:AT4G02890.2
EnsemblPlants:AT4G05050EnsemblPlants:AT4G05050.1EnsemblPlants:AT4G05050.2EnsemblPlants:AT4G05050.3entrez:825847entrez:828148ExpressionAtlas:Q8H0Y0
GeneID:825847GeneID:828148GO:GO:0005737Gramene:AT4G02890.1Gramene:AT4G02890.2Gramene:AT4G05050.1Gramene:AT4G05050.2
Gramene:AT4G05050.3hmmpanther:PTHR10666InterPro:IPR000626InterPro:IPR019954InterPro:IPR019956InterPro:IPR029071KEGG:ath:AT4G05050
KO:K08770Pfam:P0CH33Pfam:PF00240Pfscan:PS50053PIR:E85063PRINTS:PR00348PROSITE:PS00299
PROSITE:PS50053RefSeq:NP_001031585.1RefSeq:NP_001118936.1RefSeq:NP_567247.2RefSeq:NP_567286.1RefSeq:NP_849291.1scanprosite:PS00299
SMART:SM00213SMR:Q8H0Y0STRING:3702.AT4G05050.1SUPFAM:SSF54236TAIR:AT4G02890TAIR:AT4G05050tair10-symbols:UBQ11
UniGene:At.24970UniGene:At.25274UniGene:At.47590UniGene:At.48785UniGene:At.74401UniGene:At.74780UniProt:P0CH33
UniProt:Q8H0Y0
Coordinates (TAIR10) chr4:-:2588271..2588960
Molecular Weight (calculated) 25687.10 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.43
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)