suba logo
AT4G05020.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): unclear
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)H dehydrogenase B2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)H dehydrogenase B2 (NDB2); FUNCTIONS IN: disulfide oxidoreductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, extrinsic to mitochondrial inner membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G05020-MONOMERBioCyc:ARA:GQT-270-MONOMEREC:1.6.5.9EMBL:AF162444EMBL:AL161502EMBL:AY039856EMBL:BT002241
EMBL:CP002687EnsemblPlants:AT4G05020EnsemblPlants:AT4G05020.1entrez:825844ExpressionAtlas:Q94BV7Gene3D:1.10.238.10Gene3D:3.50.50.60
GeneID:825844Genevisible:Q94BV7GO:GO:0005509GO:GO:0005739GO:GO:0005743GO:GO:0005758GO:GO:0005777
GO:GO:0016491GO:GO:0055114hmmpanther:PTHR22912hmmpanther:PTHR22912:SF140HOGENOM:HOG000182501InParanoid:Q94BV7InterPro:IPR002048
InterPro:IPR011992InterPro:IPR018247InterPro:IPR023753ncoils:CoilPfam:PF00036Pfam:PF07992Pfam:Q94BV7
Pfscan:PS50222PhylomeDB:Q94BV7PIR:B85063PRIDE:Q94BV7PRO:PR:Q94BV7PROSITE:PS00018PROSITE:PS50222
ProteinModelPortal:Q94BV7Proteomes:UP000006548RefSeq:NP_567283.1scanprosite:PS00018SMART:SM00054SMR:Q94BV7SUPFAM:SSF47473
SUPFAM:SSF51905SwissPalm:Q94BV7TAIR:AT4G05020tair10-symbols:NDB2UniGene:At.4059UniProt:Q94BV7
Coordinates (TAIR10) chr4:+:2572752..2576222
Molecular Weight (calculated) 65062.60 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.33
Length 582 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNFSVFERF SKAFKDHPSL TRILVVSTIS GGGLIAYSEA NASYGANGGA VVETGTKKKK VVLLGTGWAG TSFLKNLNNS QYEVQIISPR NYFAFTPLLP
101: SVTCGTVEAR SVVEPIRNIG RKNVDTSYLE AECFKIDPAS KKVYCRSKQG LSSNGKKEFS VDYDYLVIAT GAQSNTFNIP GVEENCHFLK EVEDAQRIRK
201: TVIDSFEKAS LPELSDEERK RILHFVVVGG GPTGVEFAAE LHDFVTEDLV SLYPRAKGSV RITLLEAADH ILTMFDKRIT EFAEEKFSRD GIDVKLGSMV
301: TKVNEKDISA KTKGGEVSSI PYGMIVWSTG IGTRPVIKDF MKQIGQGNRR ALATDEWLRV EGTDNIYALG DCATINQRKV MEDVSAIFSK ADKDKSGTLT
401: LKEFQEAMDD ICVRYPQVEL YLKSKRMRGI ADLLKEAETD DVSKNNIELK IEEFKSALSQ VDSQVKFLPA TAQVAAQQGA YLAKCFDRME ECEKSPEGPI
501: RMRGEGRHRF RPFRYRHLGQ FAPLGGEQTA AQLPGDWVSI GHSSQWLWYS VYASKQVSWR TRVLVVSDWM RRFIFGRDSS SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)