suba logo
AT4G04990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.867
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF761)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G61260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JV1YeggNOG:ENOG41106B7EMBL:AF162444EMBL:AL161502
EMBL:CP002687EnsemblPlants:AT4G04990EnsemblPlants:AT4G04990.1entrez:825841
GeneID:825841GO:GO:0016021Gramene:AT4G04990.1hmmpanther:PTHR33098
hmmpanther:PTHR33098:SF10HOGENOM:HOG000153446InterPro:IPR008480KEGG:ath:AT4G04990
OMA:RTWIISSPfam:PF05553PIR:G85062Proteomes:UP000006548
RefSeq:NP_567280.1TAIR:AT4G04990TMHMM:TMhelixUniGene:At.54151
UniProt:Q9S9T8
Coordinates (TAIR10) chr4:+:2555090..2557046
Molecular Weight (calculated) 34263.20 Da
IEP (calculated) 10.38
GRAVY (calculated) -0.88
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTSRTWIIS SGLVGAISLM LRSVFNFSFT GARFLLPTNL HPIFIINGII FALAASTSLF GNGPDSPATN HHHDDDTYDY EQDHHHDHDR DRSSNNSSTS
101: SFDQNNNKVH EKENFPVRSE SGGSYGVSSP EVRFFPTAPE KPVGLRRPPT VPVKTFPQDN TSGDESETME EMWERVKAEK QPKKPNSLQD HVISRGDTKM
201: STSSWPLPSR SPSRARRPTP SLSSLSPSSS RARRPPSSPA RPGKKLMERI PSWVKLKKEL SMGREELNSR VEAFITKFKD EMKLQRLESV RRYKSFRGHN
301: DEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)