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AT4G04980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKEHeggNOG:ENOG410YIBWEMBL:AF162444EMBL:AL161502EMBL:CP002687EMBL:DQ446804EnsemblPlants:AT4G04980
EnsemblPlants:AT4G04980.1entrez:825839GeneID:825839Genevisible:Q1PEB4Gramene:AT4G04980.1hmmpanther:PTHR31342hmmpanther:PTHR31342:SF16
HOGENOM:HOG000090564InParanoid:Q1PEB4iPTMnet:Q1PEB4KEGG:ath:AT4G04980ncoils:CoilPaxDb:Q1PEB4Pfam:Q1PEB4
PhylomeDB:Q1PEB4PIR:F85062PRIDE:Q1PEB4PRO:PR:Q1PEB4Proteomes:UP000006548RefSeq:NP_567279.3TAIR:AT4G04980
UniGene:At.54150UniProt:Q1PEB4
Coordinates (TAIR10) chr4:-:2544210..2547893
Molecular Weight (calculated) 99326.20 Da
IEP (calculated) 5.60
GRAVY (calculated) -0.82
Length 880 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSGRLCGFT PITFCRKISR LQVARGLALK RLIKGKHDFR RTTTSKNNVE KKKNKEIRRT VSQISSSVAQ ASSPKSFNST KHVSTPTATA SPLSVKNSKT
101: KANTPRKNTL EGSSPKCSAN FILMVELRKN IFAFRDMIDL PSLDGSLSVT EIITQTMKDL QKLSPEIVTI NQSFEMEGAD MDKMLIFFYE DLRAIGDSWI
201: MDSDWIYRSK YKNSGVGKNK SDRLVEHVLA ALDGLIKTTR ERFGMMDLES EGRKSFTTPK GVSSEARRSF TRSASYSESN NSFYPSPLTP RSVLPGTMMM
301: SSNSTSPSLW NLRAQALDRL SPVDLKRFAM QILSQRDSES VSETKIGIEE ENEESEILAE EKEEEDNDFS VLETEGTEQE IKTEHHRESS GTEHETEAKD
401: HSEGFETEHH RIECFETEHE IDADDHIEDF ETEHHHIEGL ETEHEIDAND HIEDFETEHH HIEGFETEHE NETEDHSETT TSETDSTESS PKEDVPPPPP
501: LTSPQTPSPT VSTFNTKSSL RSQPPPPPPS PEHKAPAPPP PPPMSKASES GEFCQFSKTH STNGDNAPSM PAPPAPPGSG RSLKKATSKL RRSAQIANLY
601: WALKGKLEGR GVEGKTKKAS KGQNSVAEKS PVKVARSGMA DALAEMTKRS SYFQQIEEDV QKYAKSIEEL KSSIHSFQTK DMKELLEFHS KVESILEKLT
701: DETQVLARFE GFPEKKLEVI RTAGALYKKL DGILVELKNW KIEPPLNDLL DKIERYFNKF KGEIETVERT KDEDAKMFKR YNINIDFEVL VQVKETMVDV
801: SSNCMELALK ERREANEEAK NGEESKMKEE RAKRLWRAFQ FAFKVYTFAG GHDERADCLT RQLAHEIQTD PDQSESSIMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)