suba logo
AT4G04970.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26748395 (2016): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glucan synthase-like 1
Curator
Summary (TAIR10)
encodes a gene similar to callose synthase
Computational
Description (TAIR10)
glucan synthase-like 1 (GSL1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: reproduction, 1,3-beta-glucan biosynthetic process, pollen development; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 5 (TAIR:AT4G03550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G04970-MONOMERCAZy:GT48EC:2.4.1.34eggNOG:ENOG410XQ8VeggNOG:KOG0916EMBL:AF162444EMBL:AL161502
EMBL:AY050990EMBL:CP002687EnsemblPlants:AT4G04970EnsemblPlants:AT4G04970.1entrez:825838GeneID:825838Genevisible:Q9S9U0
GO:GO:0000003GO:GO:0000148GO:GO:0003843GO:GO:0005886GO:GO:0006075GO:GO:0007623GO:GO:0008360
GO:GO:0009555GO:GO:0016021GO:GO:0071555Gramene:AT4G04970.1hmmpanther:PTHR12741hmmpanther:PTHR12741:SF23HOGENOM:HOG000029513
InParanoid:Q9S9U0InterPro:IPR003440InterPro:IPR026899KEGG:00500+2.4.1.34KEGG:ath:AT4G04970KO:K11000OMA:QMRLQPP
PaxDb:Q9S9U0Pfam:PF02364Pfam:PF14288Pfam:Q9S9U0PhylomeDB:Q9S9U0PIR:E85062PRIDE:Q9S9U0
PRO:PR:Q9S9U0Proteomes:UP000006548RefSeq:NP_567278.1SMART:SM01205STRING:3702.AT4G04970.1TAIR:AT4G04970tair10-symbols:ATGSL01
tair10-symbols:ATGSL1tair10-symbols:GSL01tair10-symbols:GSL1TMHMM:TMhelixUniGene:At.26533UniProt:Q9S9U0
Coordinates (TAIR10) chr4:+:2537039..2542434
Molecular Weight (calculated) 205537.00 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.05
Length 1768 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRRQRPSVAT ARDAPSLEVY NIIPIHDFLT EHPSLRYPEV RAAAAALRIV GDLPKPPFAD FTPRMDLMDW LGLLFGFQID NVRNQRENLV LHLANSQMRL
0101: QPPPRHPDGL DPTVLRRFRK KLLRNYTNWC SFLGVRCHVT SPIQSRHQTN AVLNLRRELL YVALYLLIWG ESANLRFMPE CLCYIFHHMA MELNKVLAGE
0201: FDDMTGMPYW PSFSGDCAFL KSVVMPIYKT VKTEVESSNN GTKPHSAWRN YDDINEYFWS KRALKSLKWP LDYTSNFFDT TPKSSRVGKT GFVEQRSFWN
0301: VYRSFDRLWI LLLLYLQAAI IVATSDVKFP WQDRDVEVAL LTVFISWAGL RLLQSVLDAS TQYSLVSRET YWLFIRLTLK FVVAVAWTVL FSVFYARIWS
0401: QKNKDGVWSR AANERVVTFL KVVFVYVIPE LLALVLFIVP CIRNWVEELN LGVVYFLTWW FYSKTFVGRG MREGLVDNVK YTLFWIIVLA TKFIFSYFLQ
0501: IRPLIAPTRA LLNLKDATYN WHEFFGSTHR IAVGMLWLPV ILVYLMDLQI WYSIYSSLVG ATIGLFSHLG EIRNIDQLRL RFQFFSSAMQ FNLKPEEHLL
0601: SPKATMLKKA RDAIHRLKLR YGIGQPFNKI ESSQVEATWF ALIWNEIILT FREEDLISDR EVELLELPPN CWNIRVIRWP CFLLCNELLL ALSQANELCD
0701: APDHWLWSKI CSSEYRRCAV MEAFDSIKFV ILKIVKNGTE EESILNRLFM EIDENVENEK ITEVYKLTVL LRIHEKLISL LERLMDPEKK VFRIVNILQA
0801: LYELCAWEFP KTRRSTPQLR QLGLAPISLE ADTELLFVNA INLPPLDDVV FYRQIRRVHT ILTSRDPMHN VPKNIEARER LAFFSNSLFM TMPQAPSVEK
0901: MMAFSVLTPY YDEEVMYRQE MLRAENEDGI STLFYLQRIY EDEWVNFLER MRREGAENEN DIWSKKVRDL RLWASYRGQT LSRTVRGMMY YYSALKKLAF
1001: LDSASEMDIR MGTQIAPEAR RSYYTNDGGD NTLQPTPSQE ISRMASGITH LLKGSEYGSA MMKFTYVVAC QVYGQHKARG DHRAEEILFL MKNHDALRIA
1101: YVDEVDLGRG EVEYYSVLVK FDQQLQREVE IYRIRLPGPL KLGEGKPENQ NHALIFTRGD AIQTIDMNQD NHFEEALKMR NLLESFKTYY GIRKPTILGV
1201: REKVFTGSVS SLAWFMSAQE TSFVTLGQRV LANPLKVRMH YGHPDVFDRF WFVPRGGISK ASRVINISED IFAGFNCTLR GGNVTHHEYI QVGKGRDVGL
1301: NQISMFEAKV ASGNGEQALS RDVYRLGHRL DFFRMLSFFY TTVGYYFNTM LIVFTVYAFL WGRLYLALSG VEKIAKDRSS SNEALGAILN QQFIIQLGLF
1401: TALPMILENS LERGFLPAVW DFITMQLQLA SFFYTFSMGT RTHYFGRTIL HGGAKYRATG RGFVVEHKKF AENYRLYART HFIKAIELAI ILLVYAAYSP
1501: LAKSSFVYIL MTISSWFLIT SWIISPFLFN PSGFDWLKTV NDFDDFIAWL WSRGGLFTKA DQSWFTWWNE EQEHLKTTGV WGKLLEIILD LRFFFFQYSI
1601: VYHLRIAENR TSIGVYLISW GCIIGIVAIY ITTIYAQKRY SVKEHIKYRF IQFLVILLTV LVVVMMLQFT KLTVVDLLIS LLAFVPTGWG LISIAQVLKP
1701: FLLSTVVWDT VISVARFYDL FFGLIVMAPV ALLSWLPGFQ NMQTRILFNE AFSRGLQISI ILAGKKST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)