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AT4G04900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.827
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ROP-interactive CRIB motif-containing protein 10
Curator
Summary (TAIR10)
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings.
Computational
Description (TAIR10)
ROP-interactive CRIB motif-containing protein 10 (RIC10); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: cytoplasm; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: PAK-box/P21-Rho-binding family protein (TAIR:AT4G21745.1); Has 685 Blast hits to 255 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 27; Plants - 173; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1F1eggNOG:ENOG410Z01IEMBL:AL161502EMBL:CP002687EnsemblPlants:AT4G04900EnsemblPlants:AT4G04900.1entrez:825829
Gene3D:3.90.810.10GeneID:825829Genevisible:Q9M0Y9GO:GO:0005737GO:GO:0009860GO:GO:0040008Gramene:AT4G04900.1
hmmpanther:PTHR23177hmmpanther:PTHR23177:SF8HOGENOM:HOG000120680InParanoid:Q9M0Y9InterPro:IPR000095KEGG:ath:AT4G04900OMA:SKNDSPR
PaxDb:Q9M0Y9Pfam:PF00786Pfam:Q9M0Y9Pfscan:PS50108PhylomeDB:Q9M0Y9PIR:F85061PRIDE:Q9M0Y9
PRO:PR:Q9M0Y9PROSITE:PS50108ProteinModelPortal:Q9M0Y9Proteomes:UP000006548RefSeq:NP_192399.1SMART:SM00285STRING:3702.AT4G04900.1
TAIR:AT4G04900tair10-symbols:RIC10UniGene:At.54149UniProt:Q9M0Y9
Coordinates (TAIR10) chr4:-:2486218..2487779
Molecular Weight (calculated) 17020.10 Da
IEP (calculated) 10.82
GRAVY (calculated) -0.64
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMKMKGIYK GFKCISQIFA VEKERDEIEI GFPTDVKHVA HIGWEGSSGS APGWMSEFKV GAELLSPRPS SFSNARPSTS FFTSSSSTDF DQGSSQRGIS
101: DTLRDIPPVT PINLPKNNKK KSSRRKKSSS SSSSPKSSRS SVLSKSSYKS TVSRLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)