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AT4G04890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : protodermal factor 2
Curator
Summary (TAIR10)
Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.
Computational
Description (TAIR10)
protodermal factor 2 (PDF2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: epidermal cell differentiation, regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:11139eggNOG:ENOG410IIN5eggNOG:ENOG411107HEMBL:AB056455EMBL:AF128393EMBL:AF424560EMBL:AL161502
EMBL:AY062575EMBL:BT000144EMBL:CP002687EnsemblPlants:AT4G04890EnsemblPlants:AT4G04890.1entrez:825828Gene3D:1.10.10.60
Gene3D:3.30.530.20GeneID:825828Genevisible:Q93V99GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0008289GO:GO:0009845GO:GO:0009913GO:GO:0043565GO:GO:0048825Gramene:AT4G04890.1hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF294HOGENOM:HOG000243256InParanoid:Q93V99IntAct:Q93V99InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057
InterPro:IPR017970InterPro:IPR023393iPTMnet:Q93V99KEGG:ath:AT4G04890KO:K09338ncoils:CoilOMA:WIEHMEV
PaxDb:Q93V99Pfam:PF00046Pfam:PF01852Pfam:Q93V99Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q93V99
PIR:E85061PRIDE:Q93V99PRO:PR:Q93V99PROSITE:PS00027PROSITE:PS50071PROSITE:PS50848ProteinModelPortal:Q93V99
Proteomes:UP000006548RefSeq:NP_567274.1scanprosite:PS00027SMART:SM00234SMART:SM00389SMR:Q93V99STRING:3702.AT4G04890.1
SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT4G04890tair10-symbols:PDF2UniGene:At.4047UniProt:Q93V99
Coordinates (TAIR10) chr4:-:2476970..2480090
Molecular Weight (calculated) 81534.70 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.34
Length 743 amino acids
Sequence (TAIR10)
(BLAST)
001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)