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AT4G04770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATP binding cassette protein 1
Curator
Summary (TAIR10)
Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.
Computational
Description (TAIR10)
ATP binding cassette protein 1 (ABC1); FUNCTIONS IN: protein binding, ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: cellular iron ion homeostasis, regulation of response to red or far red light, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufB (InterPro:IPR010231), SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD superfamily protein (TAIR:AT5G44316.1); Has 12037 Blast hits to 11965 proteins in 1962 species: Archae - 330; Bacteria - 6550; Metazoa - 4; Fungi - 1; Plants - 99; Viruses - 0; Other Eukaryotes - 5053 (source: NCBI BLink).
Protein Annotations
BioGrid:11125eggNOG:COG0719eggNOG:ENOG410II6VEMBL:AF118223EMBL:AL161501EMBL:AY052195EMBL:AY056410
EMBL:AY142069EMBL:BK001497EMBL:CP002687EnsemblPlants:AT4G04770EnsemblPlants:AT4G04770.1entrez:825814GeneID:825814
Genevisible:Q9ZS97GO:GO:0005215GO:GO:0006810GO:GO:0006879GO:GO:0009507GO:GO:0009570GO:GO:0016226
GO:GO:0042626GO:GO:0055085GO:GO:2000030Gramene:AT4G04770.1hmmpanther:PTHR30508hmmpanther:PTHR30508:SF1HOGENOM:HOG000069112
InParanoid:Q9ZS97IntAct:Q9ZS97InterPro:IPR000825InterPro:IPR010231KEGG:ath:AT4G04770KO:K07033OMA:YPYVDVR
PaxDb:Q9ZS97Pfam:PF01458Pfam:Q9ZS97PhylomeDB:Q9ZS97PIR:A85060PRIDE:Q9ZS97PRO:PR:Q9ZS97
ProteinModelPortal:Q9ZS97Proteomes:UP000006548RefSeq:NP_192386.1SMR:Q9ZS97STRING:3702.AT4G04770.1SUPFAM:0044748TAIR:AT4G04770
tair10-symbols:ABC1tair10-symbols:ATABC1tair10-symbols:ATNAP1tair10-symbols:LAF6TIGRfam:TIGR01980TIGRFAMs:TIGR01980UniGene:At.4040
UniGene:At.67960UniProt:Q9ZS97
Coordinates (TAIR10) chr4:-:2427998..2429785
Molecular Weight (calculated) 61871.00 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.45
Length 557 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLANGIS SFSPQPTSDS SKSPKGFHPK PESLKFPSPK SLNPTRPIFK LRADVGIDSR PIGASESSSS GTSTVSSTDK LQQYFQNLDY DKKYGFVEDI
101: DSFTIPKGLS EETIRLISKL KEEPDWMLEF RFKAYAKFLK LEEPKWSDNR YPSINFQDMC YYSAPKKKPT LNSLDEVDPQ LLEYFDKLGV PLTEQKRLAN
201: VAVDAVIDSV SIATTHRKTL EKSGVIFCSI SEAIREYPDL IKKYLGRVVP SDDNYYAALN SAVFSDGSFC YIPKNTRCPM PISTYFRINA METGQFERTL
301: IVAEEGSFVE YLEGCTAPSY DTNQLHAAVV ELYCGKGAEI KYSTVQNWYA GDEQGKGGIY NFVTKRGLCA GDRSKISWTQ VETGSAITWK YPSVVLEGDD
401: SVGEFYSVAL TNNYQQADTG TKMIHKGKNT KSRIISKGIS AGHSRNCYRG LVQVQSKAEG AKNTSTCDSM LIGDKAAANT YPYIQVKNPS AKVEHEASTS
501: KIGEDQLFYF QQRGIDHERA LAAMISGFCR DVFNKLPDEF GAEVNQLMSI KLEGSVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)