suba logo
AT4G04690.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G08750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW9VeggNOG:ENOG411054QEMBL:AF149414EMBL:AL161501EMBL:CP002687EnsemblPlants:AT4G04690EnsemblPlants:AT4G04690.1
entrez:825802GeneID:825802Genevisible:Q9S9V1Gramene:AT4G04690.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127HOGENOM:HOG000112505
InParanoid:Q9S9V1InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451KEGG:ath:AT4G04690OMA:IAWCERE
PaxDb:Q9S9V1Pfam:PF00646Pfam:PF07734Pfam:Q9S9V1Pfscan:PS50181PhylomeDB:Q9S9V1PIR:B85059
PRIDE:Q9S9V1PRO:PR:Q9S9V1PROSITE:PS50181ProteinModelPortal:Q9S9V1Proteomes:UP000006548RefSeq:NP_567270.1SMART:SM00256
STRING:3702.AT4G04690.1SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT4G04690TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.65325UniProt:Q9S9V1
Coordinates (TAIR10) chr4:-:2373999..2375135
Molecular Weight (calculated) 44099.40 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.36
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSKRVYRS LPFELVEEIL KKTPAESLNR FKSTCKQWYG IITSKRFMYN HLDHSPERFI RIDDHKTVQI MDPMTGIFSD SPVPDVFRSP HSFASMVHCD
101: GLMLCICSDS SYERTREANL AVWNPVTKKI KWIEPLDSYY ETDYFGIGYD NTCRENYKIV RFSGPMSFDD TECEIYEFKS DSWRTLDTKY WDVYTQCRGV
201: SVKGNMYWIA DTKEKFILRF DFSMETFKNV CVCPPIGCTG RLGCFSGDRL PLLLQDTDFG GEEEVSTDIA VWLTNKLSDE VVSFTKYFNV TSPHLPLLQC
301: HGDMARPGYF IGDHKNILAW CEGEVEEDDK WYTCITLYQI DQCGIRKQIE TGRHRSFRYL DPFICSYVYV PSLIPVPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)