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AT4G04650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.311
plasma membrane 0.239
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16923014 (2006): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT1G43730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AF149414EMBL:AL161501
EMBL:CP002687EnsemblPlants:AT4G04650EnsemblPlants:AT4G04650.1entrez:825798
GeneID:825798GO:GO:0003964GO:GO:0009409GO:GO:0010319
Gramene:AT4G04650.1hmmpanther:PTHR25952hmmpanther:PTHR25952:SF191HOGENOM:HOG000131623
InterPro:IPR011009InterPro:IPR026960KEGG:ath:AT4G04650OMA:WFNTELA
Pfam:PF13966PhylomeDB:Q9S9V5PIR:F85058Proteomes:UP000006548
RefSeq:NP_567266.1SMR:Q9S9V5STRING:3702.AT4G04650.1SUPFAM:SSF56112
TAIR:AT4G04650UniGene:At.54145UniProt:Q9S9V5
Coordinates (TAIR10) chr4:-:2353989..2355213
Molecular Weight (calculated) 37939.90 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.02
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MCKLRVVARP FIVCEVGSGV TAKFWHDNWI GLGPLIEVIG PLGPRTVGLP IDAVVRDALR GTSWWIASSR SRNPIIVQLK NLLPEAQGLL DCQHDDSFLW
101: KTDLHAPSNR FSAPRTWSAL HPQSHTVPWH KAVWFKNHVP KHAFICWVVA WNRLHTRDRL QNWGLSIPAE CLLCNAHDDS RAHLFFECQF SGVVWRFFTA
201: STNLNPPAQL MDCLNWLLSP SREKNICLII RLAFHSCVYA IWRERNQRLH SGVSRSTESI LKDIQLIIRA RLDPLSRSTA HQPNALSLLG TCEPEITVYK
301: APEIEVKLDN FNEKTDIYSF GIVFLSLALF WI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)