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AT4G04640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18433418 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATPase, F1 complex, gamma subunit protein
Curator
Summary (TAIR10)
One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.
Computational
Description (TAIR10)
ATPC1; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: photosynthetic electron transport in photosystem II, ATP synthesis coupled proton transport, ATP biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, gamma subunit protein (TAIR:AT1G15700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1336-MONOMERBioGrid:11108eggNOG:COG0224eggNOG:KOG1531EMBL:AF149414EMBL:AF428422EMBL:AL161501
EMBL:AY065199EMBL:AY081505EMBL:AY088438EMBL:CP002687EMBL:M61741EnsemblPlants:AT4G04640EnsemblPlants:AT4G04640.1
entrez:825797GeneID:825797Genevisible:Q01908GO:GO:0006754GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0009544GO:GO:0009579GO:GO:0009772GO:GO:0009941GO:GO:0015986GO:GO:0016020GO:GO:0030234
GO:GO:0045261GO:GO:0046933GO:GO:0046961GO:GO:0050790Gramene:AT4G04640.1HAMAP:MF_00815hmmpanther:PTHR11693
hmmpanther:PTHR11693:SF21HOGENOM:HOG000215910InParanoid:Q01908IntAct:Q01908InterPro:IPR000131InterPro:IPR023632InterPro:IPR023633
iPTMnet:Q01908KEGG:ath:AT4G04640KO:K02115OMA:FLYTAQNPANTHER:PTHR11693PaxDb:Q01908Pfam:PF00231
Pfam:Q01908PhylomeDB:Q01908PIR:B39732PRIDE:Q01908PRINTS:PR00126PRO:PR:Q01908PROSITE:PS00153
ProteinModelPortal:Q01908Proteomes:UP000006548RefSeq:NP_567265.1scanprosite:PS00153SMR:Q01908STRING:3702.AT4G04640.1SUPFAM:SSF52943
TAIR:AT4G04640tair10-symbols:ATPC1TIGRfam:TIGR01146TIGRFAMs:TIGR01146UniGene:At.291UniProt:Q01908
Coordinates (TAIR10) chr4:-:2350761..2351882
Molecular Weight (calculated) 40913.30 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.11
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MACSNLTTMW VSSKPSLSAD SSSLSFRSVL KCPTNTSSPP SRASSVSPLQ ASLRELRDRI DSVKNTQKIT EAMKLVAAAK VRRAQEAVVN GRPFSETLVE
101: VLYNINEQLQ TDDVDVPLTK VRPVKKVALV VVTGDRGLCG GFNNFIIKKA EARIKELKGL GLEYTVISVG KKGNSYFLRR PYIPVDKYLE AGTLPTAKEA
201: QAVADDVFSL FISEEVDKVE LLYTKFVSLV KSEPVIHTLL PLSPKGEICD INGTCVDAAE DEFFRLTTKE GKLTVERETF RTPTADFSPI LQFEQDPVQI
301: LDALLPLYLN SQILRALQES LASELAARMS AMSSASDNAS DLKKSLSMVY NRKRQAKITG EILEIVAGAN AQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)