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AT4G04370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g04370-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g04370-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 51385 Blast hits to 13710 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 119; Plants - 50626; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AF069441EMBL:AL161500
EMBL:CP002687EnsemblPlants:AT4G04370EnsemblPlants:AT4G04370.1entrez:825757
Gene3D:1.25.40.10GeneID:825757Genevisible:Q9XE98Gramene:AT4G04370.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF653HOGENOM:HOG000115634InParanoid:Q9XE98
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G04370OMA:GCYSRAG
PaxDb:Q9XE98Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q9XE98Pfscan:PS51375PhylomeDB:Q9XE98PIR:C85055
PRIDE:Q9XE98PRO:PR:Q9XE98PROSITE:PS51375ProteinModelPortal:Q9XE98
Proteomes:UP000006548RefSeq:NP_192346.1SMR:Q9XE98STRING:3702.AT4G04370.1
TAIR:AT4G04370TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.66630
UniGene:At.70894UniGene:At.74904UniProt:Q9XE98
Coordinates (TAIR10) chr4:-:2134060..2136249
Molecular Weight (calculated) 81216.70 Da
IEP (calculated) 6.66
GRAVY (calculated) 0.10
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRTSSVLNS TKYFNSHINH LSSHGDHKQV LSTFSSMLAN KLLPDTFTFP SLLKACASLQ RLSFGLSIHQ QVLVNGFSSD FYISSSLVNL YAKFGLLAHA
101: RKVFEEMRER DVVHWTAMIG CYSRAGIVGE ACSLVNEMRF QGIKPGPVTL LEMLSGVLEI TQLQCLHDFA VIYGFDCDIA VMNSMLNLYC KCDHVGDAKD
201: LFDQMEQRDM VSWNTMISGY ASVGNMSEIL KLLYRMRGDG LRPDQQTFGA SLSVSGTMCD LEMGRMLHCQ IVKTGFDVDM HLKTALITMY LKCGKEEASY
301: RVLETIPNKD VVCWTVMISG LMRLGRAEKA LIVFSEMLQS GSDLSSEAIA SVVASCAQLG SFDLGASVHG YVLRHGYTLD TPALNSLITM YAKCGHLDKS
401: LVIFERMNER DLVSWNAIIS GYAQNVDLCK ALLLFEEMKF KTVQQVDSFT VVSLLQACSS AGALPVGKLI HCIVIRSFIR PCSLVDTALV DMYSKCGYLE
501: AAQRCFDSIS WKDVVSWGIL IAGYGFHGKG DIALEIYSEF LHSGMEPNHV IFLAVLSSCS HNGMVQQGLK IFSSMVRDFG VEPNHEHLAC VVDLLCRAKR
601: IEDAFKFYKE NFTRPSIDVL GIILDACRAN GKTEVEDIIC EDMIELKPGD AGHYVKLGHS FAAMKRWDDV SESWNQMRSL GLKKLPGWSK IEMNGKTTTF
701: FMNHTSHSDD TVSLLKLLSR EMMQFGSNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)