suba logo
AT4G03600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.683
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYT1eggNOG:ENOG410YNPDEMBL:AC005142EMBL:AL161497
EMBL:CP002687EMBL:DQ446797EnsemblPlants:AT4G03600EnsemblPlants:AT4G03600.1
entrez:825660GeneID:825660GO:GO:0016021Gramene:AT4G03600.1
hmmpanther:PTHR34656hmmpanther:PTHR34656:SF1KEGG:ath:AT4G03600OMA:YFLLIRR
PhylomeDB:Q9SY38PIR:F85045Proteomes:UP000006548RefSeq:NP_567259.1
TAIR:AT4G03600TMHMM:TMhelixUniGene:At.34150UniProt:Q9SY38
Coordinates (TAIR10) chr4:-:1603820..1604308
Molecular Weight (calculated) 18241.70 Da
IEP (calculated) 10.25
GRAVY (calculated) 0.71
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MADQTESPRS YHIFITIMSK RRTWVCLFIA VYAILVSSSW NLLRSVLNWY KLQYTSSNSD YSPSRLPAVY ASVVLGAMFG AMSMVAAMTV AVPAVMVIWI
101: SVVVLLAFFG KSRRVLVVEG RKITREVVGF VFKVLLKEGN VVAAFCAVLA YFLLIRRDFD SY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)