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AT4G03580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G17080.1); Has 155 Blast hits to 136 proteins in 31 species: Archae - 0; Bacteria - 11; Metazoa - 28; Fungi - 14; Plants - 17; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVIZeggNOG:ENOG41105V4EMBL:AC005142EMBL:AL161497
EMBL:CP002687EnsemblPlants:AT4G03580EnsemblPlants:AT4G03580.1entrez:825658
GeneID:825658Gramene:AT4G03580.1KEGG:ath:AT4G03580ncoils:Coil
PhylomeDB:Q9SY36PIR:D85045Proteomes:UP000006548RefSeq:NP_192267.1
TAIR:AT4G03580UniGene:At.54119UniProt:Q9SY36
Coordinates (TAIR10) chr4:+:1596985..1599091
Molecular Weight (calculated) 26343.90 Da
IEP (calculated) 6.37
GRAVY (calculated) -1.11
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDQFVKRWD PFNEKDSLQK KKNEEQEEEE EDVKKLKQIK QPNPLNEQKR EHEARQKREQ DQADQGQGRQ YQAQPVQPQS KIPLFGDGGL ILTDWTTSHL
101: IDDPIDQYKD TCSSVVFTRL TQASYNKDRH IAPRQNMSYR DLVEYLKGKS KGRKLSFQNL NEPIKYIQNV GLLKDVIYHV PAVITEKCDA HVMFVVAKDM
201: IKAPNGESGS DGADQADQAD QAEQKRIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)