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AT4G03430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pre-mRNA splicing factor-related
Curator
Summary (TAIR10)
Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2770 (EMB2770); FUNCTIONS IN: binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold, response to abiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Ubiquitin supergroup (InterPro:IPR019955), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 (TAIR:AT4G38590.1); Has 3874 Blast hits to 2098 proteins in 386 species: Archae - 98; Bacteria - 366; Metazoa - 1194; Fungi - 916; Plants - 656; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRKDeggNOG:KOG0495EMBL:AF071527EMBL:AK226702EMBL:AL161496EMBL:AY059720EMBL:AY142510
EMBL:CP002687EnsemblPlants:AT4G03430EnsemblPlants:AT4G03430.1entrez:827925Gene3D:1.25.40.10GeneID:827925Genevisible:Q9ZT71
GO:GO:0000244GO:GO:0000398GO:GO:0005634GO:GO:0005681GO:GO:0009409GO:GO:0009845GO:GO:0015030
GO:GO:0046540GO:GO:0071013GO:GO:0080188GO:GO:2000630GO:GO:2000636Gramene:AT4G03430.1hmmpanther:PTHR11246
hmmpanther:PTHR11246:SF1HOGENOM:HOG000116247InParanoid:Q9ZT71IntAct:Q9ZT71InterPro:IPR000626InterPro:IPR003107InterPro:IPR010491
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR027108iPTMnet:Q9ZT71KEGG:ath:AT4G03430KO:K12855
ncoils:CoilOMA:VFERQQGPANTHER:PTHR11246:SF1PaxDb:Q9ZT71Pfam:PF06424Pfam:Q9ZT71Pfscan:PS50053
Pfscan:PS50293PhylomeDB:Q9ZT71PIR:E85043PRIDE:Q9ZT71PRO:PR:Q9ZT71PROSITE:PS50053PROSITE:PS50293
ProteinModelPortal:Q9ZT71Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_192252.1SMART:SM00028SMART:SM00386
STRING:3702.AT4G03430.1SUPFAM:SSF48452TAIR:AT4G03430tair10-symbols:EMB2770tair10-symbols:STA1UniGene:At.3947UniProt:Q9ZT71
Coordinates (TAIR10) chr4:-:1517411..1520500
Molecular Weight (calculated) 115582.00 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.53
Length 1029 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVFLSIPNGK TLSIDVNPNS TTISAFEQLA HQRSDVPQSF LRYSLRMRNP SRVFVDSKDS DSILLSDLGV SRFSTVIIHV LLLGGMQAAP PKPRLDFLNS
0101: KPPSNYVAGL GRGATGFTTR SDIGPARAAP DLPDRSALAT AAAPGVGRGA GKPSEAEAED DEEAEEKRYD ENQTFDEFEG NDVGLFANAE YDEDDKEADA
0201: IWESIDQRMD SRRKDRREAK LKEEIEKYRA SNPKITEQFA DLKRKLHTLS ADEWDSIPEI GDYSLRNKKK KFESFVPIPD TLLEKAKKEK ELVMALDPKS
0301: RAAGGSETPW GQTPVTDLTA VGEGRGTVLS LKLDNLSDSV SGQTVVDPKG YLTDLKSMKR TTDEEIYDRN RARLLYKSLT QSNPKNPNGW IAAARVEEVD
0401: GKIKAARFQI QRGCEECPKN EDVWLEACRL ANPEDAKGVI AKGVKLIPNS VKLWLEAAKL EHDVENKSRV LRKGLEHIPD SVRLWKAVVE LANEEDARIL
0501: LHRAVECCPL HLELWVALAR LETYAESKKV LNKAREKLPK EPAIWITAAK LEEANGKLDE ANDNTAMVGK IIDRGIKTLQ REGVVIDREN WMSEAEACER
0601: VGSVATCQAI IKNTIGIGVE EEDRKRTWVA DADECKKRGS IETARAIYAH ALSVFLTKKS IWLKAAQLEK SHGSRESLDA LLRKAVTYVP QAEVLWLMGA
0701: KEKWLAGDVP AARAILQEAY AAIPNSEEIW LAAFKLEFEN KEPERARMLL AKARERGGTE RVWMKSAIVE RELGNVEEER RLLNEGLKQF PTFFKLWLML
0801: GQLEERFKHL EQARKAYDTG LKHCPHCIPL WLSLADLEEK VNGLNKARAI LTTARKKNPG GAELWLAAIR AELRHDNKRE AEHLMSKALQ DCPKSGILWA
0901: ADIEMAPRPR RKTKSIDAMK KCDRDPHVTI AVAKLFWQDK KVEKARAWFE RAVTVGPDIG DFWALFYKFE LQHGSDEDRK EVVAKCVACE PKHGEKWQAI
1001: SKAVENAHQP IEVILKRVVN ALSKEENSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)