suba logo
AT4G03410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT1G52870.2); Has 1387 Blast hits to 1385 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 569; Fungi - 328; Plants - 324; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111SYHeggNOG:KOG1944EMBL:BT015863EMBL:CP002687EnsemblPlants:AT4G03410EnsemblPlants:AT4G03410.1entrez:827932
ExpressionAtlas:Q5XEV3GeneID:827932GO:GO:0016021Gramene:AT4G03410.1hmmpanther:PTHR11266hmmpanther:PTHR11266:SF16HOGENOM:HOG000030608
IntAct:Q5XEV3InterPro:IPR007248KEGG:ath:AT4G03410KO:K13348PANTHER:PTHR11266Pfam:PF04117PhylomeDB:Q5XEV3
Proteomes:UP000006548RefSeq:NP_192250.2TAIR:AT4G03410UniGene:At.34182UniProt:Q5XEV3
Coordinates (TAIR10) chr4:+:1501907..1503486
Molecular Weight (calculated) 36175.40 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.00
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALCCCPTT IIVSGKVSSR IKTAGPLPRI NPFKNQKRLI TERRNLIVKS IIEDREAIDV KNDNFKAEEE LSEDKVEDTD RLMSRGINAA IVLAAGTVAV
101: TKLLTIDHDY WQGWTLYEIL RYAPEHNWFA YEQILKTNPV LAKMAISGIV YSLGDWIAQC YEGKPLFEFD RTRVLRSGLV GFTLHGSLSH YYYQFCEALF
201: PFQEWWVVPA KVAFDQTVWS AIWNSIYFTV LGLLRFQSPA DIFSEIKTTF LPMLTAGWKL WPLAHLVTYG VIPVDQRLLW VDCIELIWVT ILSTYSNEKA
301: EAQASEETNS SSHSSED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)