AT4G03400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.544 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DWARF IN LIGHT 2 (DFL2); INVOLVED IN: response to auxin stimulus, response to light stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT2G46370.4); Has 1425 Blast hits to 1352 proteins in 234 species: Archae - 0; Bacteria - 486; Metazoa - 52; Fungi - 2; Plants - 663; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1497675..1499729 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66862.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 591 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METVEAGHDD VIGWFEHVSE NACKVQSETL RRILELNSGV EYLRKWLGTV DVEKMDDYTL ETLFTSLVPI VSHADLDPYI QRIADGETSP LLTQEPITVL 101: SLSSGTTEGR QKYVPFTRHS AQTTLQIFRL SAAYRSRFYP IREGGRILEF IYAGKEFKTL GGLTVGTATT HYYASEEFKT KQETTKSFTC SPQEVISGGD 201: FGQCTYCHLL LGLHYSSQVE FVASAFSYTI VQAFSFFEEI WREICADIKE GNLSSRITLP KMRKAVLALI RPNPSLASHI EEICLELETN LGWFGLISKL 301: WPNAKFISSI MTGSMLPYLN KLRHYAGGLP LVSADYGSTE SWIGVNVDPH LPPEDVSFAV IPTFSYFEFI PLYRRQNQSD ICIDGDFVED KPVPLSQVKL 401: GQEYELVLTT FTGLYRYRLG DVVEVTSFHK GTPKLSFIYR RKLILTINID KNTEKDLQRV VDKASQLLSR STRAEVVDFT SHADVIARPG HYVIYWEIRG 501: EADDKALEEC CREMDTAFVD YGYVVSRRMN SIGPLELRVV ERGTFGKVAE RCVGKCGGLN QFKTPRCTTN SVMLDILNDS TIKRFRSSAY D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)