AT4G03370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G03360.1); Has 8010 Blast hits to 3621 proteins in 600 species: Archae - 0; Bacteria - 12; Metazoa - 3496; Fungi - 1010; Plants - 2178; Viruses - 95; Other Eukaryotes - 1219 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1478078..1478965 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33647.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMTVENESG STFSIDIGLQ DTVLTFKRKI EMTQRIPVSR QTIFFQGKLL EDHLDIFEWD ILQNPLLHLS ISPDDNPTQN QVPQSPSNPI HEFVKNQDSA 101: EDKKNPVLLH QTGKPPLPPK SSPLTTENFS KNQHDRPVIT KMVPELLGPQ GTSPVTVGRR RNRDQEVQNR VSSSSDSVKE VINIPDTPAR KKTKNYPLKI 201: TVMVQPFEET RRIQVEVNVL SNVEVLRKEL VKMQERGELN LPHEGFFFIH KQDVLREDQS FMANRVAPGD TIEIFQGYVT YTGSLPRTVR KLSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)