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AT4G03320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocon at the inner envelope membrane of chloroplasts 20-IV
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
translocon at the inner envelope membrane of chloroplasts 20-IV (tic20-IV); LOCATED IN: integral to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109), Chloroplast protein import component Tic20 (InterPro:IPR005691); BEST Arabidopsis thaliana protein match is: translocon at the inner envelope membrane of chloroplasts 20 (TAIR:AT1G04940.1); Has 86 Blast hits to 84 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JAEWeggNOG:ENOG41118H4EMBL:AC005275EMBL:AF361633EMBL:AL161496EMBL:AY056069EMBL:AY084543
EMBL:CP002687EnsemblPlants:AT4G03320EnsemblPlants:AT4G03320.1entrez:827972GeneID:827972Genevisible:Q9ZQZ9GO:GO:0005739
GO:GO:0009507GO:GO:0009706GO:GO:0016021GO:GO:0045037Gramene:AT4G03320.1hmmpanther:PTHR33510hmmpanther:PTHR33510:SF2
HOGENOM:HOG000029086InParanoid:Q9ZQZ9InterPro:IPR005691KEGG:ath:AT4G03320OMA:ICLLLECPaxDb:Q9ZQZ9Pfam:PF16166
Pfam:Q9ZQZ9PhylomeDB:Q9ZQZ9PIR:B85042PRIDE:Q9ZQZ9PRO:PR:Q9ZQZ9Proteomes:UP000006548RefSeq:NP_192241.1
STRING:3702.AT4G03320.1TAIR:AT4G03320tair10-symbols:tic20-IVTIGRfam:TIGR00994TIGRFAMs:TIGR00994TMHMM:TMhelixUniGene:At.34195
UniGene:At.3940UniProt:Q9ZQZ9
Coordinates (TAIR10) chr4:+:1464529..1465820
Molecular Weight (calculated) 32522.10 Da
IEP (calculated) 10.08
GRAVY (calculated) 0.16
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MQGLAATTTN RGSLTFLAPR NHSPISKKFV NPRVFFPNVD SSAKLRLSAS SISRRCPREI APLSATASVD FAAAATSSNQ LFANGLPPLA PGLRRHRRPI
101: EPARVAKDDF FKIKLPKIAE RPEWWWRTLA CVPYLISLQI SDVGFYVQPF LEKHDAIGDM IYFIPGAINR WPTWFFMVYC YLGYMWVVKN KELPHYLRFH
201: MMMGMLLETA LQVIWCTSNF FPLIHFKGRF GMYYWMAIGF TYICLLLECI RCALAGVYAQ IPFMTDAASI HTLFNLGGFQ RPLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)