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AT4G03290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EF hand calcium-binding protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EF hand calcium-binding protein family; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G05990.1); Has 24510 Blast hits to 17278 proteins in 1569 species: Archae - 2; Bacteria - 188; Metazoa - 10458; Fungi - 4683; Plants - 5334; Viruses - 0; Other Eukaryotes - 3845 (source: NCBI BLink).
Protein Annotations
BioGrid:13284eggNOG:COG5126eggNOG:KOG0027EMBL:AC005275EMBL:AL161496EMBL:BT003938EMBL:BT005119
EMBL:CP002687EnsemblPlants:AT4G03290EnsemblPlants:AT4G03290.1entrez:827993Gene3D:1.10.238.10GeneID:827993Genevisible:Q9ZR02
GO:GO:0005509GO:GO:0005634GO:GO:0005737GO:GO:0009409Gramene:AT4G03290.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF586
HOGENOM:HOG000233018InParanoid:Q9ZR02IntAct:Q9ZR02InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT4G03290
KO:K13448OMA:ARMLTQEPaxDb:Q9ZR02Pfam:PF13499Pfam:Q9ZR02Pfscan:PS50222PhylomeDB:Q9ZR02
PIR:G85041PRO:PR:Q9ZR02PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9ZR02Proteomes:UP000006548RefSeq:NP_192238.1
scanprosite:PS00018SMART:SM00054SMR:Q9ZR02STRING:3702.AT4G03290.1SUPFAM:SSF47473TAIR:AT4G03290UniGene:At.34199
UniGene:At.67819UniProt:Q9ZR02
Coordinates (TAIR10) chr4:+:1442813..1443277
Molecular Weight (calculated) 17590.90 Da
IEP (calculated) 4.09
GRAVY (calculated) -0.49
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)