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AT4G03280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15060130 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosynthetic electron transfer C
Curator
Summary (TAIR10)
Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen.
Computational
Description (TAIR10)
photosynthetic electron transfer C (PETC); FUNCTIONS IN: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity; INVOLVED IN: response to karrikin, defense response to bacterium, photosynthetic electron transport in cytochrome b6/f, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Rieske iron-sulphur protein, C-terminal (InterPro:IPR005805), Cytochrome b6-f complex Fe-S subunit (InterPro:IPR014909), Rieske iron-sulphur protein (InterPro:IPR014349); BEST Arabidopsis thaliana protein match is: Ubiquinol-cytochrome C reductase iron-sulfur subunit (TAIR:AT5G13430.1); Has 5359 Blast hits to 5351 proteins in 1316 species: Archae - 24; Bacteria - 2813; Metazoa - 294; Fungi - 164; Plants - 410; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G03280-MONOMERBioCyc:ARA:GQT-2516-MONOMERBioGrid:13287EC:1.10.9.1eggNOG:COG0723eggNOG:KOG1671EMBL:AC005275
EMBL:AF370566EMBL:AF410296EMBL:AJ243702EMBL:AJ292972EMBL:AL161496EMBL:AY093726EMBL:CP002687
EnsemblPlants:AT4G03280EnsemblPlants:AT4G03280.1entrez:827996Gene3D:2.102.10.10GeneID:827996Genevisible:Q9ZR03GO:GO:0005886
GO:GO:0009496GO:GO:0009507GO:GO:0009512GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009767
GO:GO:0009941GO:GO:0010196GO:GO:0016020GO:GO:0016021GO:GO:0042742GO:GO:0045158GO:GO:0046028
GO:GO:0046872GO:GO:0051537GO:GO:0080167HAMAP:MF_01335hmmpanther:PTHR10134hmmpanther:PTHR10134:SF5HOGENOM:HOG000255192
InParanoid:Q9ZR03IntAct:Q9ZR03InterPro:IPR005805InterPro:IPR014349InterPro:IPR014909InterPro:IPR017941InterPro:IPR023960
iPTMnet:Q9ZR03KEGG:ath:AT4G03280KO:K02636OMA:KGDPTYIPANTHER:PTHR10134PaxDb:Q9ZR03Pfam:PF00355
Pfam:PF08802Pfam:Q9ZR03Pfscan:PS51296PhylomeDB:Q9ZR03PIR:F85041PIR:PA0041PRIDE:Q9ZR03
PRINTS:PR00162PRO:PR:Q9ZR03PROSITE:PS51296ProteinModelPortal:Q9ZR03Proteomes:UP000006548RefSeq:NP_192237.1RefSeq:NP_849295.1
SMR:Q9ZR03STRING:3702.AT4G03280.1SUPFAM:SSF50022TAIR:AT4G03280tair10-symbols:PETCtair10-symbols:PGR1TCDB:3.D.3.5.2
TMHMM:TMhelixUniGene:At.486UniGene:At.67366UniProt:Q9ZR03
Coordinates (TAIR10) chr4:+:1440314..1441717
Molecular Weight (calculated) 24367.40 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.09
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)