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AT4G03180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411263HeggNOG:KOG4851EMBL:AC005275EMBL:AK226481EMBL:AL161496EMBL:AY088486EMBL:BT025539
EMBL:CP002687EnsemblPlants:AT4G03180EnsemblPlants:AT4G03180.1entrez:828047GeneID:828047Gramene:AT4G03180.1hmmpanther:PTHR15657
hmmpanther:PTHR15657:SF1HOGENOM:HOG000244105InterPro:IPR013730KEGG:ath:AT4G03180ncoils:CoilOMA:ANMKSENPANTHER:PTHR15657
Pfam:PF08524PhylomeDB:Q9ZR13PIR:D85040Proteomes:UP000006548RefSeq:NP_192227.1STRING:3702.AT4G03180.1TAIR:AT4G03180
UniGene:At.24291UniGene:At.69891UniProt:Q9ZR13
Coordinates (TAIR10) chr4:+:1403289..1404663
Molecular Weight (calculated) 21693.90 Da
IEP (calculated) 10.65
GRAVY (calculated) -1.53
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKFYQNADH ETDKSKSAET KKRKNMRRLG GGGLSLQTFA NMKSENNRYN PSLIKKQKEF YKNAKYVSKF RKSLKQQNIP DKNETGETSK VGDDDDDDKR
101: KGKSNKRIGV EDLYKQTREE MERVRKEREA MFQAKKEAKE EAESRRKEAK GKMLRKTRHG QPVMKYRIEH LLESIKKSAG INEIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)