suba logo
AT4G03150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYIAeggNOG:ENOG4111QN5EMBL:AF428466EMBL:AY125546
EMBL:CP002687EnsemblPlants:AT4G03150EnsemblPlants:AT4G03150.1entrez:828059
GeneID:828059Gramene:AT4G03150.1hmmpanther:PTHR36776hmmpanther:PTHR36776:SF1
IntAct:Q944G6KEGG:ath:AT4G03150OMA:TSISYQEPhylomeDB:Q944G6
Proteomes:UP000006548RefSeq:NP_567252.1STRING:3702.AT4G03150.1TAIR:AT4G03150
UniGene:At.21031UniGene:At.34223UniProt:Q944G6
Coordinates (TAIR10) chr4:-:1393731..1394529
Molecular Weight (calculated) 20785.60 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.26
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSWVCSSVT RNVVKSHPLS LTKHLDFPAT IRRRSVSFPA TIRRRSVSFP ITSAPKFPSL KLQKSQSSIH EGEEDSESAV QALTIPEEWL LPSRAIEESE
101: WLRVTLHKWL DDEYCPEPTN VEISEVAAKS YYSSLLEKES DMGEILLKMA QDLTSISYQE SFHGAFTSAN AAINLIVDRI ETGLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)