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AT4G03120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, U1-C type (InterPro:IPR013085), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13362eggNOG:COG5136eggNOG:KOG3454EMBL:AC005275
EMBL:AK221730EMBL:AK227824EMBL:AL161496EMBL:BT004807
EMBL:CP002687EnsemblPlants:AT4G03120EnsemblPlants:AT4G03120.1entrez:828071
GeneID:828071Genevisible:Q56XE4GO:GO:0000243GO:GO:0000387
GO:GO:0000395GO:GO:0003729GO:GO:0005685GO:GO:0008270
GO:GO:0030619GO:GO:0071004Gramene:AT4G03120.1HAMAP:MF_03153
hmmpanther:PTHR31148hmmpanther:PTHR31148:SF1HOGENOM:HOG000238970InParanoid:Q56XE4
IntAct:Q56XE4InterPro:IPR000690InterPro:IPR003604InterPro:IPR013085
InterPro:IPR017340iPTMnet:Q56XE4KEGG:ath:AT4G03120KO:K11095
OMA:GFPPMPGPANTHER:PTHR31148PaxDb:Q56XE4Pfam:PF06220
Pfam:Q56XE4Pfscan:PS50171PIR:F85039PIRSF:PIRSF037969
PRIDE:Q56XE4PRO:PR:Q56XE4PROSITE:PS50171ProteinModelPortal:Q56XE4
Proteomes:UP000006548RefSeq:NP_567250.1SMART:SM00451SMR:Q56XE4
STRING:3702.AT4G03120.1SUPFAM:SSF57667TAIR:AT4G03120UniGene:At.34226
UniProt:Q56XE4
Coordinates (TAIR10) chr4:+:1385747..1387331
Molecular Weight (calculated) 22399.90 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.86
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRYYCDYCD TYLTHDSPSV RKQHNAGYKH KANVRIYYQQ FEEQQTQSLI DQRIKEHLGQ TGGYQQVGAV FNQHMLARPR PPMMLPPGSM PMGMRPPVLP
101: RPMMPPQGYM PPPGVPQMMA PPGAPLPPPP QNGILRPPGM APIPGQGGGP PGMAPIPGQG GGPPPNYNGL PPPPPYHTNP AAPPSGNFNN PNLNNPNPSA
201: ESPESNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)