suba logo
AT4G03030.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G63220.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AF069442EMBL:AL161495EMBL:BT026494EMBL:CP002687EMBL:U37704
EnsemblPlants:AT4G03030EnsemblPlants:AT4G03030.1entrez:828110Gene3D:2.120.10.80GeneID:828110Genevisible:Q0V7S6Gramene:AT4G03030.1
hmmpanther:PTHR24412hmmpanther:PTHR24412:SF213HOGENOM:HOG000237917InParanoid:Q0V7S6InterPro:IPR001810InterPro:IPR006652InterPro:IPR015915
KEGG:ath:AT4G03030OMA:CLFPTDPPaxDb:Q0V7S6Pfam:PF01344Pfam:Q0V7S6PhylomeDB:Q0V7S6PIR:T01390
PRIDE:Q0V7S6PRO:PR:Q0V7S6ProteinModelPortal:Q0V7S6Proteomes:UP000006548RefSeq:NP_192212.2SMART:SM00612SMR:Q0V7S6
STRING:3702.AT4G03030.1SUPFAM:0052715SUPFAM:SSF81383TAIR:AT4G03030UniGene:At.25585UniProt:Q0V7S6
Coordinates (TAIR10) chr4:-:1335942..1337270
Molecular Weight (calculated) 49973.60 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.22
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLPIFPSRL QCSSSSSSSS SRSSFFRPKL RIDPSLTLIP GLSNDVGRLI LSFVPYPHIS RIKSTCKSWY AFLSSKTLIS LRHSRDNSNT NNLSHLLCIF
101: PQDPSISPPF LFDPVTLSWR SLPLMPCNPH VYGLCNFVAV ALGPYVYVLG GSAFDTRSYP LDVPLPTSSV FRYSFVKSVW ERLSPMMSPR GSFACAAMPG
201: SCGRIIVAGG GSRHTLFGAA GSRMSSVEMY DVEKDEWRVM NELPRFRAGC VGFLVENEKE KEKEEEGREF WVMGGYGGSR TVSGILPVDE YYKDAVVMDL
301: RVDGGEKWRV VGDMWGEEER PKLGKIVAVD CGKPVFFMLD KDWILRYEMG LNRWRKESSV PKKAHYDKPV GFVALNGELH VMILLDGYNL MDTRHTRQQR
401: KAGSLMIHMY DPKKKTWRSV VSKPPFNHQL DFRTTVMCTI RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)