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AT4G03010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G03440.1); Has 57010 Blast hits to 20810 proteins in 924 species: Archae - 22; Bacteria - 3353; Metazoa - 7717; Fungi - 414; Plants - 41880; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G03010-MONOMEReggNOG:COG4886eggNOG:KOG0619EMBL:AF069442
EMBL:AL161495EMBL:CP002687EMBL:DQ446794EnsemblPlants:AT4G03010
EnsemblPlants:AT4G03010.1entrez:828113Gene3D:3.80.10.10GeneID:828113
Gramene:AT4G03010.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF105InterPro:IPR001611
InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT4G03010OMA:CMVLPVQ
Pfam:PF08263Pfam:PF13516Pfam:PF13855Pfscan:PS51450
PhylomeDB:Q9ZT98PIR:T01392PROSITE:PS51450Proteomes:UP000006548
RefSeq:NP_192210.1SMR:Q9ZT98STRING:3702.AT4G03010.1SUPFAM:SSF52058
TAIR:AT4G03010TMHMM:TMhelixUniGene:At.54104UniProt:Q9ZT98
Coordinates (TAIR10) chr4:+:1329952..1331139
Molecular Weight (calculated) 43509.80 Da
IEP (calculated) 8.46
GRAVY (calculated) 0.14
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFATLFSVL LLLLRFGLIV ESIIVPVDFL ALQAIRKSLD DLPGSNFFDS WDFTSDPCNF AGVYCDDDKV TALNLGDPRA GSPGLSGRID PAIGKLSALT
101: ELSIVPGRIM GSLPHTISQS KNLRFLAISR NFISGEIPAS LSELRGLKTL DLSYNQLTGS IPPSIGSLPE LSNLILCHNH LNGSIPQFLS QSLTRIDLKR
201: NNLTGIISLT SLPPSLQYLS LAWNQLTGPV YRVLLRLNQL NYLDLSLNRF TGAIPGQIFT FPITNLQLQR NFFYGVIQPP NQVTIPTVDL SYNRFSGELS
301: PLLSNVQNLY LNNNRFTGQV PVSFVDRLLA SNIQTLYLQH NFLTGIQISP AADIPVSSSL CLQYNCMVLP VQTPCPVKAG LQKTRPTTQC SEWRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)