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AT4G02990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G44020.1); Has 1500 Blast hits to 957 proteins in 84 species: Archae - 0; Bacteria - 2; Metazoa - 103; Fungi - 3; Plants - 1315; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AF069442EMBL:AF378901EMBL:AL161495EMBL:AY052742EMBL:BX827924
EMBL:CP002687EnsemblPlants:AT4G02990EnsemblPlants:AT4G02990.1entrez:828116GeneID:828116GO:GO:0003690GO:GO:0005739
GO:GO:0006355GO:GO:0008380GO:GO:0009536GO:GO:0009793GO:GO:0032502GO:GO:0042793GO:GO:0042794
Gramene:AT4G02990.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF24HOGENOM:HOG000241428InterPro:IPR003690KEGG:ath:AT4G02990KO:K15032
OMA:STIKPRHPfam:PF02536PhylomeDB:Q9ZT96PIR:T01394Proteomes:UP000006548RefSeq:NP_192208.1SMART:SM00733
SMR:Q9ZT96STRING:3702.AT4G02990.1TAIR:AT4G02990UniGene:At.10877UniProt:Q9ZT96
Coordinates (TAIR10) chr4:+:1322158..1323783
Molecular Weight (calculated) 61552.60 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.31
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIRFCNGFT KPGFLLVHFE PPSFFAVRSR SLSDSTYGNL CNHKKRPGTG IGLTVQCAIA NRRFSSRSLD SPRRERSSRS SSSSGRDRDR DKDKGRDSKS
101: LYSRPSLLDM NKEKAANRAK VYEFLRGIGI VPDELDGLEL PVTADVMKER VEFLHKLGLT IEDINNYPLV LGCSVKKNMV PVLDYLGKLG VRKSTFTEFL
201: RRYPQVLHSS VVIDLAPVVK YLQGLDIKPS DVPRVLERYP EVLGFKLEGT MSTSVAYLVG IGVARREIGG ILTRYPEILG MRVARIIKPL VEYLEVLGIP
301: RLAAARLIEK RPHILGFELD DTVKPNVQIL QDFNVRETSL PSIIAQYPEI IGIDLKPKLD TQRKLLCSAI HLNPEDLGSL IERMPQFVSL SESPMLKHID
401: FLTKCGFSID QTREMVIGCP QVLALNLGIM KLSFEYFQKE MKRPLQDLVD FPAFFTYGLE STVKPRHKKI IKKGIKCSLA WMLNCSDEKF EQRMSYDTID
501: IEEVETDPSS FDMNTLMQPE REEESDSEYE EEEDDDDEEF A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)