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AT4G02980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25922490 (2015): endoplasmic reticulum
  • PMID:25922490 (2015): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : endoplasmic reticulum auxin binding protein 1
Curator
Summary (TAIR10)
Auxin binding protein involved in cell elongation and cell division. ABP1 is ubiquitinated in vitro and in planta by AtRma2.
Computational
Description (TAIR10)
endoplasmic reticulum auxin binding protein 1 (ABP1); FUNCTIONS IN: auxin binding; INVOLVED IN: positive regulation of cell division, positive regulation of cell size, unidimensional cell growth, positive regulation of DNA endoreduplication, cytokinesis; LOCATED IN: endomembrane system, endoplasmic reticulum lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin-binding protein (InterPro:IPR000526), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 186 Blast hits to 186 proteins in 64 species: Archae - 10; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
BioGrid:13409DIP:DIP-61369NeggNOG:ENOG410IWVReggNOG:ENOG4112D1V
EMBL:AF069442EMBL:AF389278EMBL:AL161495EMBL:AY087315
EMBL:AY093754EMBL:CP002687EMBL:S40550EMBL:X55111
EMBL:X69901EnsemblPlants:AT4G02980EnsemblPlants:AT4G02980.1entrez:828120
Gene3D:2.60.120.10GeneID:828120Genevisible:P33487GO:GO:0000911
GO:GO:0004872GO:GO:0005788GO:GO:0005886GO:GO:0008270
GO:GO:0009826GO:GO:0010011GO:GO:0032877GO:GO:0045793
GO:GO:0051781Gramene:AT4G02980.1hmmpanther:PTHR37236hmmpanther:PTHR37236:SF1
HOGENOM:HOG000030816InParanoid:P33487InterPro:IPR000526InterPro:IPR011051
InterPro:IPR014710KEGG:ath:AT4G02980OMA:PYYWDEQPaxDb:P33487
Pfam:P33487Pfam:PF02041PhylomeDB:P33487PIR:S31584
PRIDE:P33487PRINTS:PR00655PRO:PR:P33487PROSITE:PS00014
ProteinModelPortal:P33487Proteomes:UP000006548RefSeq:NP_192207.1SMR:P33487
STRING:3702.AT4G02980.1SUPFAM:SSF51182TAIR:AT4G02980tair10-symbols:ABP
tair10-symbols:ABP1TMHMM:TMhelixUniGene:At.148UniProt:P33487
Coordinates (TAIR10) chr4:-:1319902..1321449
Molecular Weight (calculated) 22045.60 Da
IEP (calculated) 5.76
GRAVY (calculated) 0.09
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVLSVGSAS SSPIVVVFSV ALLLFYFSET SLGAPCPING LPIVRNISDL PQDNYGRPGL SHMTVAGSVL HGMKEVEIWL QTFAPGSETP IHRHSCEEVF
101: VVLKGSGTLY LAETHGNFPG KPIEFPIFAN STIHIPINDA HQVKNTGHED LQVLVIISRP PIKIFIYEDW FMPHTAARLK FPYYWDEQCI QESQKDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)