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AT4G02980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25922490 (2015): endoplasmic reticulum
  • PMID:25922490 (2015): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endoplasmic reticulum auxin binding protein 1
Curator
Summary (TAIR10)
Auxin binding protein involved in cell elongation and cell division. ABP1 is ubiquitinated in vitro and in planta by AtRma2.
Computational
Description (TAIR10)
endoplasmic reticulum auxin binding protein 1 (ABP1); FUNCTIONS IN: auxin binding; INVOLVED IN: positive regulation of cell division, positive regulation of cell size, unidimensional cell growth, positive regulation of DNA endoreduplication, cytokinesis; LOCATED IN: endomembrane system, endoplasmic reticulum lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin-binding protein (InterPro:IPR000526), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 186 Blast hits to 186 proteins in 64 species: Archae - 10; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
BioGrid:13409DIP:DIP-61369NeggNOG:ENOG410IWVReggNOG:ENOG4112D1VEMBL:AF069442EMBL:AF389278EMBL:AL161495
EMBL:AY087315EMBL:AY093754EMBL:CP002687EMBL:S40550EMBL:X55111EMBL:X69901EnsemblPlants:AT4G02980
EnsemblPlants:AT4G02980.1entrez:828120Gene3D:2.60.120.10GeneID:828120Genevisible:P33487GO:GO:0000911GO:GO:0004872
GO:GO:0005788GO:GO:0005886GO:GO:0008270GO:GO:0009826GO:GO:0010011GO:GO:0032877GO:GO:0045793
GO:GO:0051781Gramene:AT4G02980.1hmmpanther:PTHR37236hmmpanther:PTHR37236:SF1HOGENOM:HOG000030816InParanoid:P33487InterPro:IPR000526
InterPro:IPR011051InterPro:IPR014710KEGG:ath:AT4G02980OMA:PYYWDEQPaxDb:P33487Pfam:P33487Pfam:PF02041
PhylomeDB:P33487PIR:S31584PRIDE:P33487PRINTS:PR00655PRO:PR:P33487PROSITE:PS00014ProteinModelPortal:P33487
Proteomes:UP000006548RefSeq:NP_192207.1SMR:P33487STRING:3702.AT4G02980.1SUPFAM:SSF51182TAIR:AT4G02980tair10-symbols:ABP
tair10-symbols:ABP1TMHMM:TMhelixUniGene:At.148UniProt:P33487
Coordinates (TAIR10) chr4:-:1319902..1321449
Molecular Weight (calculated) 22045.60 Da
IEP (calculated) 5.76
GRAVY (calculated) 0.09
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVLSVGSAS SSPIVVVFSV ALLLFYFSET SLGAPCPING LPIVRNISDL PQDNYGRPGL SHMTVAGSVL HGMKEVEIWL QTFAPGSETP IHRHSCEEVF
101: VVLKGSGTLY LAETHGNFPG KPIEFPIFAN STIHIPINDA HQVKNTGHED LQVLVIISRP PIKIFIYEDW FMPHTAARLK FPYYWDEQCI QESQKDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)