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AT4G02920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.658
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJK3eggNOG:ENOG410YCTREMBL:CP002687EnsemblPlants:AT4G02920
EnsemblPlants:AT4G02920.1entrez:828139ExpressionAtlas:F4JHX3GeneID:828139
Gramene:AT4G02920.1hmmpanther:PTHR35095KEGG:ath:AT4G02920PaxDb:F4JHX3
PhylomeDB:F4JHX3PRIDE:F4JHX3ProteinModelPortal:F4JHX3Proteomes:UP000006548
RefSeq:NP_567248.1STRING:3702.AT4G02920.2TAIR:AT4G02920UniGene:At.20854
UniProt:F4JHX3
Coordinates (TAIR10) chr4:+:1292816..1294670
Molecular Weight (calculated) 47197.10 Da
IEP (calculated) 8.83
GRAVY (calculated) -0.17
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKLCFMTSH GYSIPGLGLP QDLCNTEIIK NSRSHLVNPG ARQEIIPASS FNLNTELLEP WKPVSSFSQF VEIDSAMMKP LLMDVHETAP ESLILSFGIA
101: DKFARQEKVM EFLLSQSEEF KEKGFDMSLL NELMEFESMK SSSQLRPYDT SSVLYLNQEL GKPVLDLVRD MMENPEFSVR SNGHVLFSSS SNPELNDLLS
201: IASEFNLSRN STTKWRQLSP LIPHFQRFES DVFTPAKLKA VTVLAPLKSP EKSRLKSPRK HNTKRKAKER DLYKRNHLHA YESLLSLMIG NDHRHKHTTV
301: LSLQKSCGEL SELLTQFSIT AAGTGIAVLF SVVCSLASRR VPFCANKFFD TGLGLSLVIL SWAVNRLREV IVHVNRKANK PCSSLKDDEI INSVERSMKE
401: VYYRAATVIA VFALRFAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)