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AT4G02770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem I subunit D-1
Curator
Summary (TAIR10)
Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1)
Computational
Description (TAIR10)
photosystem I subunit D-1 (PSAD-1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I protein PsaD (InterPro:IPR003685); BEST Arabidopsis thaliana protein match is: photosystem I subunit D-2 (TAIR:AT1G03130.1); Has 510 Blast hits to 510 proteins in 137 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 3; Other Eukaryotes - 198 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:MONOMER-1098BioCyc:MetaCyc:MONOMER-1098BioGrid:13472eggNOG:ENOG410IHD6eggNOG:ENOG4111HAVEMBL:AC004044EMBL:AF324675
EMBL:AF326887EMBL:AF389290EMBL:AJ245906EMBL:AL161495EMBL:AY062512EMBL:AY081671EMBL:AY088533
EMBL:AY102159EMBL:AY113939EMBL:CP002687EnsemblPlants:AT4G02770EnsemblPlants:AT4G02770.1entrez:828183Gene3D:3.30.1470.10
GeneID:828183Genevisible:Q9S7H1GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009538GO:GO:0009579
GO:GO:0009941GO:GO:0010287GO:GO:0015979GO:GO:0016020Gramene:AT4G02770.1hmmpanther:PTHR31982hmmpanther:PTHR31982:SF4
HOGENOM:HOG000111347InParanoid:Q9S7H1IntAct:Q9S7H1InterPro:IPR003685iPTMnet:Q9S7H1KEGG:ath:AT4G02770KO:K02692
MINT:MINT-8199695OMA:VITWEAKPaxDb:Q9S7H1Pfam:PF02531Pfam:Q9S7H1PhylomeDB:Q9S7H1PIR:C85035
PRIDE:Q9S7H1PRO:PR:Q9S7H1ProteinModelPortal:Q9S7H1Proteomes:UP000006548RefSeq:NP_192186.1SMR:Q9S7H1STRING:3702.AT4G02770.1
SUPFAM:0039454SUPFAM:SSF64234TAIR:AT4G02770tair10-symbols:PSAD-1UniGene:At.20829UniGene:At.22672UniGene:At.23628
UniProt:Q9S7H1
Coordinates (TAIR10) chr4:-:1229247..1229873
Molecular Weight (calculated) 22599.10 Da
IEP (calculated) 10.35
GRAVY (calculated) -0.37
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQAAGIFN SAITTAATSG VKKLHFFSTT HRPKSLSFTK TAIRAEKTDS SAAAAAAPAT KEAPVGFTPP QLDPNTPSPI FAGSTGGLLR KAQVEEFYVI
101: TWNSPKEQIF EMPTGGAAIM REGPNLLKLA RKEQCLALGT RLRSKYKITY QFYRVFPNGE VQYLHPKDGV YPEKANPGRE GVGLNMRSIG KNVSPIEVKF
201: TGKQSYDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)