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AT4G02720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111VW4eggNOG:KOG2812EMBL:AY075686EMBL:AY102143EMBL:CP002687EnsemblPlants:AT4G02720EnsemblPlants:AT4G02720.1
entrez:828193GeneID:828193GO:GO:0005634GO:GO:0005731GO:GO:0044030GO:GO:2000232Gramene:AT4G02720.1
hmmpanther:PTHR13087HOGENOM:HOG000243180IntAct:Q8S9I4InterPro:IPR009269KEGG:ath:AT4G02720ncoils:CoilOMA:ASHTNGR
PANTHER:PTHR13087Pfam:PF06047PhylomeDB:Q8S9I4Proteomes:UP000006548RefSeq:NP_192181.2STRING:3702.AT4G02720.1TAIR:AT4G02720
UniGene:At.34274UniProt:Q8S9I4
Coordinates (TAIR10) chr4:-:1204545..1205813
Molecular Weight (calculated) 48465.40 Da
IEP (calculated) 9.47
GRAVY (calculated) -1.72
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMNSLPRRF GKNHGYLDRD YRNGRRSGSD SDEELKGLSH EEYRRQKRLK MRKSAKFCFW ENTPSPPRDQ NEDSDENADE IQDKNGGERD DNSKGKERKG
101: KSDSESESDG LRSRKRKSKS SRSKRRRKRS YDSDSESEGS ESDSEEEDRR RRRKSSSKRK KSRSSRSFRK KRSHRRKTKY SDSDESSDED SKAEISASSS
201: GEEEDTKSKS KRRKKSSDSS SKRSKGEKTK SGSDSDGTEE DSKMQVDETV KNTELELDEE ELKKFKEMIE LKKKSSAVDE EEEEGDVGPM PLPKAEGHIS
301: YGGALRPGEG DAIAQYVQQG KRIPRRGEVG LNAEEIQKFE DLGYVMSGSR HQRMNAIRIR KENQVYSAED KRALAMFNYE EKAKREAKVM SDLQRLVQRH
401: MGEEVGPNHD PFGAGKTEED DD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)