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AT4G02620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar ATPase subunit F family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vacuolar ATPase subunit F family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit F, eukaryotic (InterPro:IPR005772), ATPase, V1/A1 complex, subunit F (InterPro:IPR008218); Has 520 Blast hits to 520 proteins in 240 species: Archae - 39; Bacteria - 0; Metazoa - 211; Fungi - 130; Plants - 61; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
BioGrid:13510eggNOG:COG1436eggNOG:KOG3432EMBL:AC002330
EMBL:AL161494EMBL:AY065277EMBL:AY084277EMBL:AY117236
EMBL:CP002687EnsemblPlants:AT4G02620EnsemblPlants:AT4G02620.1entrez:828221
Gene3D:3.40.50.10580GeneID:828221Genevisible:Q9ZQX4GO:GO:0005773
GO:GO:0005774GO:GO:0005794GO:GO:0005886GO:GO:0015991
GO:GO:0033180GO:GO:0046961Gramene:AT4G02620.1hmmpanther:PTHR13861
hmmpanther:PTHR13861:SF4HOGENOM:HOG000056545InParanoid:Q9ZQX4IntAct:Q9ZQX4
InterPro:IPR005772InterPro:IPR008218KEGG:ath:AT4G02620KO:K02151
OMA:QNVAEMIPANTHER:PTHR13861PaxDb:Q9ZQX4Pfam:PF01990
Pfam:Q9ZQX4PhylomeDB:Q9ZQX4PIR:T01087PIRSF:PIRSF015945
PRIDE:Q9ZQX4PRO:PR:Q9ZQX4ProteinModelPortal:Q9ZQX4Proteomes:UP000006548
Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_192171.1SMR:Q9ZQX4
STRING:3702.AT4G02620.1SUPFAM:SSF159468TAIR:AT4G02620TCDB:3.A.2.2.5
TIGRfam:TIGR01101TIGRFAMs:TIGR01101UniGene:At.48825UniGene:At.68477
UniProt:Q9ZQX4
Coordinates (TAIR10) chr4:-:1149419..1151132
Molecular Weight (calculated) 14260.20 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.01
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)