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AT4G02580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADH-ubiquinone oxidoreductase 24 kDa subunit, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NADH-ubiquinone oxidoreductase 24 kDa subunit, putative; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, zinc ion binding; INVOLVED IN: response to oxidative stress, mitochondrial electron transport, NADH to ubiquinone; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), NADH:ubiquinone oxidoreductase, 24kDa subunit (InterPro:IPR002023), Thioredoxin-like fold (InterPro:IPR012336); Has 5564 Blast hits to 5564 proteins in 1535 species: Archae - 26; Bacteria - 3396; Metazoa - 195; Fungi - 114; Plants - 49; Viruses - 0; Other Eukaryotes - 1784 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02580-MONOMERBioCyc:MetaCyc:AT4G02580-MONOMEREC:1.6.5.3EC:1.6.99.3eggNOG:COG1905eggNOG:KOG3196EMBL:AC002330
EMBL:AL161494EMBL:AY052326EMBL:BT001140EMBL:CP002687EnsemblPlants:AT4G02580EnsemblPlants:AT4G02580.1entrez:828130
Gene3D:3.40.30.10GeneID:828130Genevisible:O22769GO:GO:0005739GO:GO:0005747GO:GO:0006979GO:GO:0008137
GO:GO:0008270GO:GO:0051537Gramene:AT4G02580.1hmmpanther:PTHR10371hmmpanther:PTHR10371:SF3HOGENOM:HOG000257748InParanoid:O22769
IntAct:O22769InterPro:IPR002023InterPro:IPR012336iPTMnet:O22769KEGG:ath:AT4G02580KO:K03943OMA:SDYSNPP
PaxDb:O22769Pfam:O22769Pfam:PF01257PhylomeDB:O22769PIR:T01091PIRSF:PIRSF000216PRIDE:O22769
PRO:PR:O22769PROSITE:PS01099ProteinModelPortal:O22769Proteomes:UP000006548Reactome:R-ATH-6799198RefSeq:NP_567244.1scanprosite:PS01099
SMR:O22769STRING:3702.AT4G02580.1SUPFAM:SSF52833TAIR:AT4G02580TCDB:3.D.1.6.3TIGRfam:TIGR01958TIGRFAMs:TIGR01958
UniGene:At.22487UniProt:O22769
Coordinates (TAIR10) chr4:+:1134586..1136906
Molecular Weight (calculated) 28390.20 Da
IEP (calculated) 8.03
GRAVY (calculated) -0.36
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)