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AT4G02570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cullin 1
Curator
Summary (TAIR10)
Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response.
Computational
Description (TAIR10)
cullin 1 (CUL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin homology (InterPro:IPR016158), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 2 (TAIR:AT1G02980.1); Has 2243 Blast hits to 2199 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 958; Fungi - 500; Plants - 373; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5647eggNOG:KOG2166EMBL:AK317123EnsemblPlants:AT4G02570EnsemblPlants:AT4G02570.1EnsemblPlants:AT4G02570.2EnsemblPlants:AT4G02570.3
EnsemblPlants:AT4G02570.4entrez:825648ExpressionAtlas:B9DGE3Gene3D:1.10.10.10GeneID:825648GO:GO:0006511GO:GO:0009734
GO:GO:0031461Gramene:AT4G02570.1Gramene:AT4G02570.2Gramene:AT4G02570.3Gramene:AT4G02570.4hmmpanther:PTHR11932hmmpanther:PTHR11932:SF84
InterPro:IPR001373InterPro:IPR011991InterPro:IPR016157InterPro:IPR016158InterPro:IPR016159InterPro:IPR019559KEGG:ath:AT4G02570
KO:K03347OMA:GTCHINGPaxDb:B9DGE3Pfam:PF00888Pfam:PF10557Pfam:Q94AH6Pfscan:PS50069
PhylomeDB:B9DGE3PRIDE:B9DGE3PROSITE:PS01256PROSITE:PS50069ProteinModelPortal:B9DGE3RefSeq:NP_001031575.1RefSeq:NP_001031576.1
RefSeq:NP_001190661.1RefSeq:NP_567243.1scanprosite:PS01256SMART:SM00182SMART:SM00884SMR:B9DGE3STRING:3702.AT4G02570.1
SUPFAM:SSF46785SUPFAM:SSF74788SUPFAM:SSF75632TAIR:AT4G02570tair10-symbols:ATCUL1tair10-symbols:AXR6tair10-symbols:CUL1
UniGene:At.24877UniGene:At.67849UniProt:B9DGE3UniProt:Q94AH6
Coordinates (TAIR10) chr4:+:1129315..1133435
Molecular Weight (calculated) 86306.70 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.47
Length 738 amino acids
Sequence (TAIR10)
(BLAST)
001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)