AT4G02540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1656 Blast hits to 645 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 1649; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:1117202..1119670 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94858.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 822 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFDSQQKPE SELISLIEKI IFVGKPESQL VVSLVTQTIS LIRSIDSDPD TKQDSEPELM SLISQIYSYL ESRNSDELSS LLDQIVSLVE STYSEPPEMK 101: LASLIKKLMP LIDTQIPPIF TGKSLTYDAK LLLYTKTLAS RDANVVSLIV EIVTLVNSTD LDSLPESELM SVVTQTISFF NSMDLDSQPE PLRKLISIFS 201: QKYFSDSELE LALDWDFMSL VDKTLTFEPE PKLISLILEI VTLVFSMYTQ WDKLISLCPR LNVSLKEEKF HVEPKYKMWN GKLECLPFNW QKFWLTRGEL 301: ASHFLCQGCN GKNHKEYNKA PAEIKHPFHP KHPLLLVSLQ MLSSTRKCYC CDEDLKNIFY YCSACEFAVN FACVQKPPEL SMHHPKWHEH TLALFPTQTP 401: FPCSICALTH SSGPFYTSSG PFYTCPPCDF VIHQKCFSLP RVIRISRHPH RISFTPSFDP EKYWSCGVCR RKIENDYGCY SCVKDGCSYA AHSKCATQTN 501: VWDGKELEGE PEEDMDEEVE SFVTISDGII QHFSHEHHHM RLDVNTDRDY DENKLCQACT TPIYFGNFFS CMQCDFILHE KCANFRRKIH HPTHPHLLTL 601: SRTYEGEHHA FACSACSVWC TAGFFYECNE EACYFKVHVQ CATISEPLVH ESHMHPLFLT SKPEEEQRTC NVCHNLRRGG SETFNCIEEC NFSLCFGCAT 701: IPHKARYKHD KHMLTISYGE KTSTMTYWCE VCEGKIDPKE RFYMCDEYCC VTLHMPCMLG WDLYMKPGSS WIRGSKKVYA LPNNHHMSRP ICPRCERRCP 801: YKTVLKENEL AFCSILCIMW KK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)