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AT4G02530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast thylakoid lumen protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
chloroplast thylakoid lumen protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 54 Blast hits to 54 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVYEeggNOG:ENOG410XY5MEMBL:AC002330EMBL:AK226276EMBL:AL161494EMBL:AY039885EMBL:AY081737
EMBL:AY088583EMBL:CP002687EnsemblPlants:AT4G02530EnsemblPlants:AT4G02530.1entrez:827927GeneID:827927Genevisible:O22773
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009543GO:GO:0009570GO:GO:0009579GO:GO:0009735
GO:GO:0009941GO:GO:0031977Gramene:AT4G02530.1hmmpanther:PTHR35742hmmpanther:PTHR35742:SF1HOGENOM:HOG000005940InParanoid:O22773
KEGG:ath:AT4G02530OMA:NDRRRHDPaxDb:O22773Pfam:O22773PhylomeDB:O22773PIR:T01096PRIDE:O22773
PRO:PR:O22773Proteomes:UP000006548RefSeq:NP_192162.1STRING:3702.AT4G02530.1TAIR:AT4G02530UniGene:At.22175UniProt:O22773
Coordinates (TAIR10) chr4:-:1112335..1114005
Molecular Weight (calculated) 23664.10 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.31
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSLLCSST LNPFFSTTLS SSKKNQIAYS GNSKNQTSSS LLWKRRELSL GFMSSLVAIG LVSNDRRRHD ANAAILEADD DEELLEKVKQ DRKKRIERQA
101: VLNSAVKEKG YLQDLVYKLS KVGQAIENND LPAAGLVLGK GIDTEWVKTV NLAFTKLSTS PEENTEVEAF NSSLASLITS VNKNDIESSK LAFVSSAGAF
201: EKWTTLTGLL EQLKGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)