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AT4G02430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0105EMBL:AF069298EMBL:AK118074
EMBL:AK319068EMBL:AL161494EMBL:CP002687EnsemblPlants:AT4G02430
EnsemblPlants:AT4G02430.1EnsemblPlants:AT4G02430.2entrez:828027ExpressionAtlas:F4JHI7
Gene3D:3.30.70.330GeneID:828027Genevisible:F4JHI7GO:GO:0000166
GO:GO:0003723GO:GO:0005681GO:GO:0006397GO:GO:0008380
GO:GO:0016607hmmpanther:PTHR24012hmmpanther:PTHR24012:SF487HOGENOM:HOG000276234
InParanoid:F4JHI7InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT4G02430
KO:K12890OMA:YIQVKLDPaxDb:F4JHI7Pfam:PF00076
Pfscan:PS50102PhylomeDB:F4JHI7PIR:T01307PRIDE:F4JHI7
PRO:PR:F4JHI7PROSITE:PS50102ProteinModelPortal:F4JHI7Proteomes:UP000006548
Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187RefSeq:NP_567235.3
RefSeq:NP_849537.1SMART:SM00360SMR:F4JHI7STRING:3702.AT4G02430.2
SUPFAM:SSF54928TAIR:AT4G02430tair10-symbols:At-SR34btair10-symbols:SR34b
UniGene:At.3885UniProt:O81290UniProt:Q8GXS0
Coordinates (TAIR10) chr4:+:1069186..1070543
Molecular Weight (calculated) 19753.90 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.90
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRSSRTIY VGNLPGDIRE REVEDLFSKY GPVVQIDLKI PPRPPGYAFV EFEDARDADD AIYGRDGYDF DGHHLRVELA HGGRRSSHDA RGSYSGRGRG
101: GRGGGDGGGR ERGPSRRSEY RVVVSGLPSS ASWQDLKDHM RKGGEVCFSQ VFRDGRGTTG IVDYTSYEDM KYAIKKAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)