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AT4G02370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : vacuole 15539469
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G02816.1); Has 618 Blast hits to 617 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 617; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXDReggNOG:ENOG410YRQAEMBL:AF069298EMBL:AF360333EMBL:AL161494EMBL:AY056340EMBL:CP002687
EnsemblPlants:AT4G02370EnsemblPlants:AT4G02370.1entrez:828057Gene3D:2.30.240.10GeneID:828057GO:GO:0005773GO:GO:0005774
Gramene:AT4G02370.1hmmpanther:PTHR31676hmmpanther:PTHR31676:SF27HOGENOM:HOG000238027InterPro:IPR007493KEGG:ath:AT4G02370OMA:NGDEMEF
Pfam:PF04398PhylomeDB:O81296PIR:T01313Proteomes:UP000006548RefSeq:NP_567230.1SMR:O81296STRING:3702.AT4G02370.1
SUPFAM:0051283SUPFAM:SSF141562TAIR:AT4G02370UniGene:At.22062UniGene:At.74049UniProt:O81296
Coordinates (TAIR10) chr4:+:1042458..1042961
Molecular Weight (calculated) 18357.10 Da
IEP (calculated) 4.87
GRAVY (calculated) 0.23
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRLPILIAS CLFLSSLTAA VVTAAESDTP TAYSLLQSYN FPVGILPKGV VAYDLDTTTG KFHAYFNDSC SFNLVGSYQL NYKSTISGYI SENKLKKLTG
101: VKVKVLFLWL NIVEVIRNGD EMEFSVGITS ANFAIQEFLE SPQCGCGFEC KDSKLDMIER IPFLSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)